Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009205A_C02 KMC009205A_c02
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566068.1| expressed protein; protein id: At2g46230.1, sup... 79 4e-14
pir||C86392 hypothetical protein T1K7.10 - Arabidopsis thaliana ... 78 8e-14
dbj|BAC21290.1| putative CGI-35 protein [Oryza sativa (japonica ... 77 1e-13
ref|NP_173975.1| hypothetical protein; protein id: At1g26530.1 [... 74 1e-12
pir||C84900 hypothetical protein At2g46230 [imported] - Arabidop... 73 3e-12
>ref|NP_566068.1| expressed protein; protein id: At2g46230.1, supported by cDNA:
gi_13605903, supported by cDNA: gi_16323291 [Arabidopsis
thaliana] gi|13605904|gb|AAK32937.1|AF367351_1
At2g46230/T3F17.12 [Arabidopsis thaliana]
gi|16323292|gb|AAL15401.1| At2g46230/T3F17.12
[Arabidopsis thaliana] gi|20197374|gb|AAC62883.2|
expressed protein [Arabidopsis thaliana]
Length = 196
Score = 79.0 bits (193), Expect = 4e-14
Identities = 35/40 (87%), Positives = 38/40 (94%)
Frame = -1
Query: 598 CDRDLKRRIRKIPGVPIMYITKHKYSIERLPEATIGGAPR 479
CDRDLKRRIRKIPGVPIMY+T KYSIE+LPEAT+GGAPR
Sbjct: 156 CDRDLKRRIRKIPGVPIMYVTNRKYSIEKLPEATLGGAPR 195
>pir||C86392 hypothetical protein T1K7.10 - Arabidopsis thaliana
gi|9797747|gb|AAF98565.1|AC013427_8 Contains a domain of
unknown function PF|01942. [Arabidopsis thaliana]
Length = 206
Score = 78.2 bits (191), Expect = 8e-14
Identities = 39/62 (62%), Positives = 46/62 (73%)
Frame = -1
Query: 598 CDRDLKRRIRKIPGVPIMYITKHKYSIERLPEATIGGAPRI*YNDTATVYNSIMLTLYPA 419
CDRDLKRRIRKIPGVPIMY+T+ KYSIE+LPEATIGG V +S+++ Y A
Sbjct: 131 CDRDLKRRIRKIPGVPIMYVTQRKYSIEKLPEATIGGGMH-------CVISSLVIFEYEA 183
Query: 418 TC 413
TC
Sbjct: 184 TC 185
>dbj|BAC21290.1| putative CGI-35 protein [Oryza sativa (japonica cultivar-group)]
Length = 201
Score = 77.4 bits (189), Expect = 1e-13
Identities = 34/37 (91%), Positives = 37/37 (99%)
Frame = -1
Query: 598 CDRDLKRRIRKIPGVPIMYITKHKYSIERLPEATIGG 488
CDRDLKRRIRK+PGVPIMYIT+H+YSIERLPEATIGG
Sbjct: 164 CDRDLKRRIRKVPGVPIMYITRHRYSIERLPEATIGG 200
>ref|NP_173975.1| hypothetical protein; protein id: At1g26530.1 [Arabidopsis
thaliana]
Length = 189
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = -1
Query: 598 CDRDLKRRIRKIPGVPIMYITKHKYSIERLPEATIGG 488
CDRDLKRRIRKIPGVPIMY+T+ KYSIE+LPEATIGG
Sbjct: 130 CDRDLKRRIRKIPGVPIMYVTQRKYSIEKLPEATIGG 166
>pir||C84900 hypothetical protein At2g46230 [imported] - Arabidopsis thaliana
Length = 216
Score = 72.8 bits (177), Expect = 3e-12
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = -1
Query: 598 CDRDLKRRIRKIPGVPIMYITKHKYSIERLPEATIGG 488
CDRDLKRRIRKIPGVPIMY+T KYSIE+LPEAT+GG
Sbjct: 156 CDRDLKRRIRKIPGVPIMYVTNRKYSIEKLPEATLGG 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,770,319
Number of Sequences: 1393205
Number of extensions: 10864172
Number of successful extensions: 25252
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25248
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
