Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009204A_C01 KMC009204A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172300.1| hypothetical protein; protein id: At1g08220.1 [... 94 1e-18
gb|EAA36242.1| hypothetical protein [Neurospora crassa] 40 0.021
ref|NP_344189.1| Conserved hypothetical protein [Sulfolobus solf... 36 0.30
gb|ZP_00076254.1| hypothetical protein [Methanosarcina barkeri] 36 0.30
ref|NP_634898.1| conserved protein [Methanosarcina mazei Goe1] g... 36 0.40
>ref|NP_172300.1| hypothetical protein; protein id: At1g08220.1 [Arabidopsis
thaliana] gi|25373391|pir||D86216 protein T23G18.8
[imported] - Arabidopsis thaliana
gi|6579209|gb|AAF18252.1|AC011438_14 T23G18.8
[Arabidopsis thaliana]
Length = 323
Score = 94.0 bits (232), Expect = 1e-18
Identities = 44/67 (65%), Positives = 52/67 (76%)
Frame = -2
Query: 574 NDTLQSQTVYSFGDHYYFRKELKILNLLTGYIFLLDNFGRGRWKGSGLATEDELSSLFSS 395
N LQ Q Y+FGDHYYFRKE+K+LNLLTGYI LLD GR RW+G G AT +E+S L S
Sbjct: 256 NSVLQRQVGYAFGDHYYFRKEIKVLNLLTGYILLLDKSGRIRWQGFGTATPEEVSQLLSC 315
Query: 394 TSLLLDE 374
TSLLL++
Sbjct: 316 TSLLLED 322
>gb|EAA36242.1| hypothetical protein [Neurospora crassa]
Length = 369
Score = 40.0 bits (92), Expect = 0.021
Identities = 20/49 (40%), Positives = 27/49 (54%)
Frame = -2
Query: 520 RKELKILNLLTGYIFLLDNFGRGRWKGSGLATEDELSSLFSSTSLLLDE 374
R+ + +LN GY +L+D+ R RW GSG A DE L +LDE
Sbjct: 292 RESIGLLNSKVGYTYLVDHNCRIRWAGSGDAEGDEKEGLIKGVQRILDE 340
>ref|NP_344189.1| Conserved hypothetical protein [Sulfolobus solfataricus]
gi|25392322|pir||D90465 conserved hypothetical protein
[imported] - Sulfolobus solfataricus
gi|13816233|gb|AAK42979.1| Conserved hypothetical
protein [Sulfolobus solfataricus]
Length = 178
Score = 36.2 bits (82), Expect = 0.30
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 310 KCPRDGSKWHPIMSTIAQTLITHLEAVMC*KKGK-TAHLLLPIQTPSIFLYQNYLVG 477
KCP+ GS + P + I++LE + K+G+ A+ ++ ++ PS YQ+Y+VG
Sbjct: 76 KCPKCGSIYFPPQDDCPKCKISNLEWIEMPKEGEIVAYTVVNVKPPSFSHYQDYIVG 132
>gb|ZP_00076254.1| hypothetical protein [Methanosarcina barkeri]
Length = 205
Score = 36.2 bits (82), Expect = 0.30
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 541 FGDHYYFRKELKILNLLTGYIFLLDNFGRGRWKGSGLATEDELSSLFSSTSLLL 380
+GD+ ++K L + + Y+FLLD G RWKG G + + LF +L+
Sbjct: 152 YGDYSGYQKTLGMDDTNLAYVFLLDPKGIIRWKGQGYSRPETEIELFEIAEILI 205
>ref|NP_634898.1| conserved protein [Methanosarcina mazei Goe1]
gi|20907516|gb|AAM32570.1| conserved protein
[Methanosarcina mazei Goe1]
Length = 138
Score = 35.8 bits (81), Expect = 0.40
Identities = 18/53 (33%), Positives = 27/53 (49%)
Frame = -2
Query: 541 FGDHYYFRKELKILNLLTGYIFLLDNFGRGRWKGSGLATEDELSSLFSSTSLL 383
+GD+ +R L + N Y+FLLD G WKG G ++ + L S+ L
Sbjct: 76 YGDYSGYRNALGMENTELAYVFLLDQEGVICWKGEGYSSHETEKKLLSTAMAL 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,117,860
Number of Sequences: 1393205
Number of extensions: 10002377
Number of successful extensions: 21458
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21451
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
