Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009201A_C01 KMC009201A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB32874.1| polyprotein [Hepatitis C virus] 32 4.0
dbj|BAA08579.1| core, env, and part of E2/NS1 [Hepatitis C virus] 32 5.2
ref|XP_133445.2| RIKEN cDNA 2600013E07 [Mus musculus] 31 6.9
gb|AAG16218.1| polyprotein [Hepatitis C virus] 31 8.9
>dbj|BAB32874.1| polyprotein [Hepatitis C virus]
Length = 3033
Score = 32.0 bits (71), Expect = 4.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 378 SIAFLQDATRRHLPSCGPSEIKGDLLKCWL 289
SI + DA H+P C P E GD +CW+
Sbjct: 211 SITWQLDAAVLHVPGCVPCEKVGDTSRCWI 240
>dbj|BAA08579.1| core, env, and part of E2/NS1 [Hepatitis C virus]
Length = 414
Score = 31.6 bits (70), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -2
Query: 366 LQDATRRHLPSCGPSEIKGDLLKCWLINFPCAVFSFEG 253
L+DA H+P C P E++G+ +CW+ P S G
Sbjct: 216 LEDAVL-HIPGCVPCELRGNKSRCWISVTPNVAISQPG 252
>ref|XP_133445.2| RIKEN cDNA 2600013E07 [Mus musculus]
Length = 367
Score = 31.2 bits (69), Expect = 6.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Frame = +3
Query: 318 FPMDHNLVGVFLLHLEEKQLILKIQTSP------------LQN*YQRVAKTRFRGLSLAH 461
FP+ +++G+ LLHLE ++ + ++ S L+N Y VA T F ++ A
Sbjct: 290 FPLHSDILGLLLLHLELRRCLFTVEPSKDKEPSPEQRRRLLRNFYTLVATTHFPPVTSAS 349
Query: 462 LG 467
+G
Sbjct: 350 IG 351
>gb|AAG16218.1| polyprotein [Hepatitis C virus]
Length = 137
Score = 30.8 bits (68), Expect = 8.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 378 SIAFLQDATRRHLPSCGPSEIKGDLLKCWLINFPCAVFSFEG 253
SI + D HLP C P ++G+ +CW+ P S G
Sbjct: 34 SIVYESDHHIMHLPGCVPCVMEGNRSRCWVALSPTVATSHVG 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,513,185
Number of Sequences: 1393205
Number of extensions: 8213583
Number of successful extensions: 18857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18853
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
