Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009195A_C04 KMC009195A_c04
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87186.1|AF480497_14 unknown [Oryza sativa (japonica cultiv... 35 0.76
dbj|BAB01962.1| emb|CAB88266.1~gene_id:T23B7.8~similar to unknow... 34 1.3
ref|NP_187821.1| unknown protein; protein id: At3g12140.1 [Arabi... 34 1.3
ref|NP_196806.1| putative protein; protein id: At5g13020.1 [Arab... 34 1.3
gb|AAC61623.1| SERA-2 [Plasmodium vinckei] 33 1.7
>gb|AAL87186.1|AF480497_14 unknown [Oryza sativa (japonica cultivar-group)]
Length = 397
Score = 34.7 bits (78), Expect = 0.76
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = -1
Query: 424 RCPEDNHFYEDIVTDYNPA 368
R P+DN+FYE +TDYNPA
Sbjct: 209 RWPDDNNFYEATITDYNPA 227
>dbj|BAB01962.1| emb|CAB88266.1~gene_id:T23B7.8~similar to unknown protein
[Arabidopsis thaliana]
Length = 383
Score = 33.9 bits (76), Expect = 1.3
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -1
Query: 442 RIIWLERCPEDNHFYEDIVTDYN 374
R +W + PEDNHFYE I+T YN
Sbjct: 139 RKVWT-KWPEDNHFYEAIITQYN 160
>ref|NP_187821.1| unknown protein; protein id: At3g12140.1 [Arabidopsis thaliana]
gi|12322022|gb|AAG51060.1|AC069473_22 unknown protein;
11168-13185 [Arabidopsis thaliana]
gi|27754266|gb|AAO22586.1| unknown protein [Arabidopsis
thaliana]
Length = 327
Score = 33.9 bits (76), Expect = 1.3
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -1
Query: 442 RIIWLERCPEDNHFYEDIVTDYN 374
R +W + PEDNHFYE I+T YN
Sbjct: 139 RKVWT-KWPEDNHFYEAIITQYN 160
>ref|NP_196806.1| putative protein; protein id: At5g13020.1 [Arabidopsis thaliana]
gi|11358228|pir||T49916 hypothetical protein T24H18.190
- Arabidopsis thaliana gi|7630058|emb|CAB88266.1|
putative protein [Arabidopsis thaliana]
Length = 414
Score = 33.9 bits (76), Expect = 1.3
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = -1
Query: 442 RIIWLERCPEDNHFYEDIVTDYNPAKINSNMGQQGTSKNST 320
R +W + P+DN +YE ++TDYNP + + S N T
Sbjct: 225 RKVWT-KWPDDNQYYEAVITDYNPVEGRHALVYDINSANET 264
>gb|AAC61623.1| SERA-2 [Plasmodium vinckei]
Length = 683
Score = 33.5 bits (75), Expect = 1.7
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -1
Query: 430 LERCPEDNHFYEDI-VTDYNPAKINSNMG--QQGTSKNSTQRSNDGEAALVLIYAHVLCN 260
LE E N+ +DI ++ ++NSN G +GT+ ST SN+ L HVL
Sbjct: 550 LEAQEEQNNNNKDISISGQTDNQVNSNDGVYSEGTNDVSTPSSNNTSIQKKLDITHVLKY 609
Query: 259 LRNNLMKSSFGK 224
++NN ++SF K
Sbjct: 610 VKNNQTQTSFIK 621
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,230,325
Number of Sequences: 1393205
Number of extensions: 9577149
Number of successful extensions: 19629
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19620
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
