Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009175A_C01 KMC009175A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC80549.1| glycine-rich RNA-binding protein [Ricinus communis] 258 4e-68
gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x... 255 4e-67
emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius] 254 1e-66
gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor] 253 1e-66
dbj|BAA92156.1| glycine-rich RNA-binding protein [Citrus unshiu] 250 2e-65
>emb|CAC80549.1| glycine-rich RNA-binding protein [Ricinus communis]
Length = 165
Score = 258 bits (660), Expect = 4e-68
Identities = 125/168 (74%), Positives = 138/168 (81%), Gaps = 3/168 (1%)
Frame = +3
Query: 48 AMADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEA 227
A AD+EYRCFVGGLAW T LE+AFS+YGE+++SK++NDRETGRSRGFGFVTF +E++
Sbjct: 2 AAADIEYRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKS 61
Query: 228 MRSAIEGMNGNELDGRNITVNEAQARGGGGGGGG--RGGGGYGGGGGRREGGYGGGGGSR 401
MR AIEGMNG LDGRNITVNEAQ+RGGGGGGGG R GGG G GGGRREGGYGGGG
Sbjct: 62 MRDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGYRNGGGGGYGGGRREGGYGGGG--- 118
Query: 402 GYGGGGGGYGGGGGGGYGGRREGGYGGDG-GGSRYGSGGGGGGGNWRS 542
GY GGGGY GGGGGGYGG R+ GYGG G GGSRY GGG GNWRS
Sbjct: 119 GYSRGGGGY-GGGGGGYGGGRDRGYGGGGDGGSRYSRGGGASEGNWRS 165
>gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x hortorum]
gi|2267569|gb|AAB63582.1| glycine-rich RNA binding
protein 2 [Pelargonium x hortorum]
Length = 166
Score = 255 bits (652), Expect = 4e-67
Identities = 125/168 (74%), Positives = 135/168 (79%), Gaps = 3/168 (1%)
Frame = +3
Query: 48 AMADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEA 227
A ADVEYRCFVGGLAW TD H LEQAFS YGE+++SK++NDRETGRSRGFGFVTF++E++
Sbjct: 2 ASADVEYRCFVGGLAWATDDHALEQAFSQYGEVVESKIINDRETGRSRGFGFVTFSNEKS 61
Query: 228 MRSAIEGMNGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGGRRE--GGYGGGGGSR 401
M AIEGMNG LDGRNITVNEAQ+RG GGGGG R GGG GGG GRRE GGY GGG
Sbjct: 62 MNDAIEGMNGQNLDGRNITVNEAQSRGSGGGGGRREGGG-GGGYGRREGGGGYSRGGGGG 120
Query: 402 GYGGGGGGYGGGGGGGYGGRRE-GGYGGDGGGSRYGSGGGGGGGNWRS 542
GYGGGGGGYGGG GGGYGG RE GYG GGGSRY GGNWRS
Sbjct: 121 GYGGGGGGYGGGNGGGYGGGREQRGYGDSGGGSRYSR--DSDGGNWRS 166
>emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]
Length = 168
Score = 254 bits (648), Expect = 1e-66
Identities = 122/169 (72%), Positives = 138/169 (81%), Gaps = 6/169 (3%)
Frame = +3
Query: 54 ADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMR 233
A+VEYRCFVGGLAW TD +LE+AFS+YG++++SK++NDRETGRSRGFGFVTF+SE+AMR
Sbjct: 3 AEVEYRCFVGGLAWATDDQSLERAFSNYGQVLESKIINDRETGRSRGFGFVTFSSEQAMR 62
Query: 234 SAIEGMNGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGGRREGGY------GGGGG 395
AIEGMNG +LDGRNITVNEAQ+RG GGGGGG GGG GG GGRREGGY G GGG
Sbjct: 63 DAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGYRGGGGGGYGGRREGGYNRGGGGGYGGG 122
Query: 396 SRGYGGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGGNWRS 542
GYGGGGGGYGGGGGG GGRREGGYGG GGG RY G +WR+
Sbjct: 123 GGGYGGGGGGYGGGGGGYGGGRREGGYGG-GGGDRYAR--GNSDSDWRN 168
>gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 170
Score = 253 bits (647), Expect = 1e-66
Identities = 124/172 (72%), Positives = 139/172 (80%), Gaps = 7/172 (4%)
Frame = +3
Query: 48 AMADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEA 227
A ADVEYRCFVGGLAW T++ TLE AF+++G+++DSKV+ DRETGRSRGFGFVTF+SE++
Sbjct: 2 AAADVEYRCFVGGLAWATNNETLEHAFANFGQVLDSKVITDRETGRSRGFGFVTFSSEQS 61
Query: 228 MRSAIEGMNGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRGY 407
M AIE MNG ELDGRNITVN+AQ+RGGGGGGGG GGGG G GG R GGYGGGGG GY
Sbjct: 62 MLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGRREGGGYGGGGG--GY 119
Query: 408 GG---GGGGYG----GGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGGNWRS 542
GG GGGGYG GGGGGGYGGRREGG GG GGG YG G GGNWR+
Sbjct: 120 GGRREGGGGYGGGGYGGGGGGYGGRREGG-GGYGGGGGYGGNRGDSGGNWRN 170
>dbj|BAA92156.1| glycine-rich RNA-binding protein [Citrus unshiu]
Length = 167
Score = 250 bits (638), Expect = 2e-65
Identities = 120/169 (71%), Positives = 135/169 (79%), Gaps = 4/169 (2%)
Frame = +3
Query: 48 AMADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEA 227
A ADVE+RCFVGGLAW T +L +AFS+YG+I++SK++NDRETGRSRGFGFVTF E++
Sbjct: 2 ASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKS 61
Query: 228 MRSAIEGMNGNELDGRNITVNEAQARGGGGGGGG----RGGGGYGGGGGRREGGYGGGGG 395
MR AIEGMNG LDGRNITVNEAQ+RG GGGGGG RGGGGYGGGG R GG GG GG
Sbjct: 62 MRDAIEGMNGQNLDGRNITVNEAQSRGSGGGGGGGYGSRGGGGYGGGGRRESGGGGGYGG 121
Query: 396 SRGYGGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGGNWRS 542
SRGYGGGGGGYGG GGY R+GGYGGD GGSRY G GG+WR+
Sbjct: 122 SRGYGGGGGGYGGRREGGYS--RDGGYGGD-GGSRYSRSGASDGGSWRN 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 781,769,682
Number of Sequences: 1393205
Number of extensions: 34576989
Number of successful extensions: 2147489
Number of sequences better than 10.0: 26497
Number of HSP's better than 10.0 without gapping: 157522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806158
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
