Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009143A_C01 KMC009143A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192945.2| putative DNA-binding protein; protein id: At4g1... 108 6e-23
pir||T06615 hypothetical protein F16J13.150 - Arabidopsis thalia... 99 3e-20
ref|NP_201032.1| putative protein; protein id: At5g62260.1 [Arab... 93 9e-20
dbj|BAA97190.1| contains similarity to DNA-binding protein~gene_... 93 9e-20
ref|NP_194008.1| putative DNA binding protein; protein id: At4g2... 93 1e-19
>ref|NP_192945.2| putative DNA-binding protein; protein id: At4g12080.1, supported by
cDNA: gi_17979484 [Arabidopsis thaliana]
gi|17979485|gb|AAL50079.1| AT4g12080/F16J13_150
[Arabidopsis thaliana] gi|23506149|gb|AAN31086.1|
At4g12080/F16J13_150 [Arabidopsis thaliana]
Length = 356
Score = 108 bits (270), Expect = 6e-23
Identities = 66/145 (45%), Positives = 91/145 (62%), Gaps = 14/145 (9%)
Frame = -3
Query: 617 LITINSGENXFREIMVFSQPTPRDICILSAVGHISTVTLNQPGSSARTVTHEGQFRILSL 438
+IT+N+GE+ +I+ FSQ PR IC+LSA G IS+VTL QP SS T+T+EG+F ILSL
Sbjct: 174 IITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSL 233
Query: 437 SGHFCPHESGGETLGRSGNMSIVFASPDGRVARWYISWYVGGCNSRAR*LVGSFVPYE-- 264
SG F P++SGG T R+G MS+ ASPDGRV ++ + S + +VGSF+
Sbjct: 234 SGSFMPNDSGG-TRSRTGGMSVSLASPDGRVVGGGLAGLLVAA-SPVQVVVGSFLAGTDH 291
Query: 263 ------------IRSRPTAAVPVSA 225
+ S PTAA+P+S+
Sbjct: 292 QDQKPKKNKHDFMLSSPTAAIPISS 316
>pir||T06615 hypothetical protein F16J13.150 - Arabidopsis thaliana
gi|4586113|emb|CAB40949.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|7267909|emb|CAB78251.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 365
Score = 99.4 bits (246), Expect = 3e-20
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 27/158 (17%)
Frame = -3
Query: 617 LITINSGENXFRE-------------IMVFSQPTPRDICILSAVGHISTVTLNQPGSSAR 477
+IT+N+GE E I+ FSQ PR IC+LSA G IS+VTL QP SS
Sbjct: 170 IITVNTGEVISSEFFFRSRHQDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGG 229
Query: 476 TVTHEGQFRILSLSGHFCPHESGGETLGRSGNMSIVFASPDGRVARWYISWYVGGCNSRA 297
T+T+EG+F ILSLSG F P++SGG T R+G MS+ ASPDGRV ++ + S
Sbjct: 230 TLTYEGRFEILSLSGSFMPNDSGG-TRSRTGGMSVSLASPDGRVVGGGLAGLLVAA-SPV 287
Query: 296 R*LVGSFVPYE--------------IRSRPTAAVPVSA 225
+ +VGSF+ + S PTAA+P+S+
Sbjct: 288 QVVVGSFLAGTDHQDQKPKKNKHDFMLSSPTAAIPISS 325
>ref|NP_201032.1| putative protein; protein id: At5g62260.1 [Arabidopsis thaliana]
Length = 441
Score = 93.2 bits (230), Expect(2) = 9e-20
Identities = 48/89 (53%), Positives = 62/89 (68%)
Frame = -3
Query: 611 TINSGENXFREIMVFSQPTPRDICILSAVGHISTVTLNQPGSSARTVTHEGQFRILSLSG 432
T+N GE+ ++M +SQ R ICILSA G IS VTL QP ++ T+T+EG+F ILSLSG
Sbjct: 203 TVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTLTYEGRFEILSLSG 262
Query: 431 HFCPHESGGETLGRSGNMSIVFASPDGRV 345
F P E+GG T GR+G MSI A P+G +
Sbjct: 263 SFMPTENGG-TKGRAGGMSISLAGPNGNI 290
Score = 25.4 bits (54), Expect(2) = 9e-20
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = -1
Query: 346 LHGGTLAGMLVAATPV 299
+ GG LAGML+AA PV
Sbjct: 290 IFGGGLAGMLIAAGPV 305
>dbj|BAA97190.1| contains similarity to DNA-binding protein~gene_id:MMI9.9
[Arabidopsis thaliana] gi|26451694|dbj|BAC42942.1|
unknown protein [Arabidopsis thaliana]
gi|28973553|gb|AAO64101.1| unknown protein [Arabidopsis
thaliana]
Length = 404
Score = 93.2 bits (230), Expect(2) = 9e-20
Identities = 48/89 (53%), Positives = 62/89 (68%)
Frame = -3
Query: 611 TINSGENXFREIMVFSQPTPRDICILSAVGHISTVTLNQPGSSARTVTHEGQFRILSLSG 432
T+N GE+ ++M +SQ R ICILSA G IS VTL QP ++ T+T+EG+F ILSLSG
Sbjct: 166 TVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTLTYEGRFEILSLSG 225
Query: 431 HFCPHESGGETLGRSGNMSIVFASPDGRV 345
F P E+GG T GR+G MSI A P+G +
Sbjct: 226 SFMPTENGG-TKGRAGGMSISLAGPNGNI 253
Score = 25.4 bits (54), Expect(2) = 9e-20
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = -1
Query: 346 LHGGTLAGMLVAATPV 299
+ GG LAGML+AA PV
Sbjct: 253 IFGGGLAGMLIAAGPV 268
>ref|NP_194008.1| putative DNA binding protein; protein id: At4g22770.1, supported by
cDNA: 12041. [Arabidopsis thaliana]
gi|7486882|pir||T04572 hypothetical protein T12H17.160 -
Arabidopsis thaliana gi|2827554|emb|CAA16562.1| putative
DNA binding protein [Arabidopsis thaliana]
gi|7269124|emb|CAB79232.1| putative DNA binding protein
[Arabidopsis thaliana] gi|21537115|gb|AAM61456.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 334
Score = 92.8 bits (229), Expect(2) = 1e-19
Identities = 49/91 (53%), Positives = 64/91 (69%)
Frame = -3
Query: 617 LITINSGENXFREIMVFSQPTPRDICILSAVGHISTVTLNQPGSSARTVTHEGQFRILSL 438
+IT+N+GE+ + I+ FSQ IC+L A G +S+VTL QP SS T+T+EG+F ILSL
Sbjct: 154 IITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYEGRFEILSL 213
Query: 437 SGHFCPHESGGETLGRSGNMSIVFASPDGRV 345
SG F P +S G T R+G MS+ ASPDGRV
Sbjct: 214 SGTFMPSDSDG-TRSRTGGMSVSLASPDGRV 243
Score = 25.4 bits (54), Expect(2) = 1e-19
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 340 GGTLAGMLVAATPV 299
GG +AG+LVAATP+
Sbjct: 245 GGGVAGLLVAATPI 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,309,013
Number of Sequences: 1393205
Number of extensions: 12634559
Number of successful extensions: 30837
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 29620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30720
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
