Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009127A_C01 KMC009127A_c01
(947 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC69854.1| putative thioredoxin m2 [Pisum sativum] 77 4e-13
ref|NP_188155.1| thioredoxin m4; protein id: At3g15360.1, suppor... 67 4e-10
sp|Q9XGS0|THIM_BRANA Thioredoxin M-type, chloroplast precursor (... 66 9e-10
gb|AAF15951.1|AF095752_1 thioredoxin m4 [Arabidopsis thaliana] 65 2e-09
sp|P48384|THIM_PEA Thioredoxin M-type, chloroplast precursor (TR... 65 2e-09
>emb|CAC69854.1| putative thioredoxin m2 [Pisum sativum]
Length = 180
Score = 77.0 bits (188), Expect = 4e-13
Identities = 37/47 (78%), Positives = 42/47 (88%)
Frame = -3
Query: 945 DESPATATRYGIRSIPTVIIFKDGEKKDAVIGSVP*TTVIASIGKFL 805
DESP+TATRYGIRSIPTVI FKDGEKKDA+IGSVP ++I +I KFL
Sbjct: 134 DESPSTATRYGIRSIPTVIFFKDGEKKDAIIGSVPKASLITTIEKFL 180
>ref|NP_188155.1| thioredoxin m4; protein id: At3g15360.1, supported by cDNA: 42151.,
supported by cDNA: gi_14030704, supported by cDNA:
gi_16974518, supported by cDNA: gi_6539613 [Arabidopsis
thaliana] gi|27735268|sp|Q9SEU6|THM4_ARATH Thioredoxin
M-type 4, chloroplast precursor (TRX-M4)
gi|7021721|gb|AAF35402.1| thioredoxin m4 [Arabidopsis
thaliana] gi|14030705|gb|AAK53027.1|AF375443_1
AT3g15360/MJK13_2 [Arabidopsis thaliana]
gi|15795101|dbj|BAB02365.1| thioredoxin m4 [Arabidopsis
thaliana] gi|16974519|gb|AAL31169.1| AT3g15360/MJK13_2
[Arabidopsis thaliana] gi|21593734|gb|AAM65701.1|
thioredoxin m4 [Arabidopsis thaliana]
Length = 193
Score = 67.0 bits (162), Expect = 4e-10
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = -3
Query: 945 DESPATATRYGIRSIPTVIIFKDGEKKDAVIGSVP*TTVIASIGKFL 805
DESP TA RYGIRS+PTVIIFK GEKKD++IG+VP T+ +I +FL
Sbjct: 145 DESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191
>sp|Q9XGS0|THIM_BRANA Thioredoxin M-type, chloroplast precursor (TRX-M)
gi|7430842|pir||T09495 thioredoxin m - rape chloroplast
gi|1943720|gb|AAB52409.1| thioredoxin-m [Brassica napus]
gi|5566283|gb|AAD45358.1| thioredoxin-m precursor
[Brassica napus]
Length = 177
Score = 65.9 bits (159), Expect = 9e-10
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = -3
Query: 945 DESPATATRYGIRSIPTVIIFKDGEKKDAVIGSVP*TTVIASIGKFL 805
D+SPAT +YG+RSIPT++IF GEKKD +IG+VP TT+ SI KFL
Sbjct: 130 DDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176
>gb|AAF15951.1|AF095752_1 thioredoxin m4 [Arabidopsis thaliana]
Length = 193
Score = 65.1 bits (157), Expect = 2e-09
Identities = 31/47 (65%), Positives = 38/47 (79%)
Frame = -3
Query: 945 DESPATATRYGIRSIPTVIIFKDGEKKDAVIGSVP*TTVIASIGKFL 805
DESP T RYGIRS+PTVIIFK GEKKD++IG+VP T+ +I +FL
Sbjct: 145 DESPNTPNRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191
>sp|P48384|THIM_PEA Thioredoxin M-type, chloroplast precursor (TRX-M)
gi|481594|pir||S38909 thioredoxin m precursor - garden
pea gi|431957|emb|CAA53900.1| thioredoxin m [Pisum
sativum]
Length = 172
Score = 65.1 bits (157), Expect = 2e-09
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = -3
Query: 945 DESPATATRYGIRSIPTVIIFKDGEKKDAVIGSVP*TTVIASIGKFL 805
DESP TAT+YGIRSIPTV+ FK+GE+KD+VIG+VP T+ + K++
Sbjct: 126 DESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 793,209,627
Number of Sequences: 1393205
Number of extensions: 17009685
Number of successful extensions: 35978
Number of sequences better than 10.0: 258
Number of HSP's better than 10.0 without gapping: 34710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35962
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53246406144
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
