Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009121A_C01 KMC009121A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P25816|PROF_BETVE Profilin (Pollen allergen Bet v 2) (Bet v I... 84 5e-21
pdb|1CQA| Birch Pollen Profilin 84 5e-21
sp|P35079|PRO1_PHLPR PROFILIN 1 (POLLEN ALLERGEN PHL P 11) (PHL ... 77 7e-20
gb|AAL76933.1|AF456482_1 minor allergen Dau c 4 profilin [Daucus... 79 1e-19
gb|AAL07320.1| profilin [Litchi chinensis] 87 1e-16
>sp|P25816|PROF_BETVE Profilin (Pollen allergen Bet v 2) (Bet v II) gi|541814|pir||JC2082
profilin - European white birch gi|166953|gb|AAA16522.1|
profilin
Length = 133
Score = 83.6 bits (205), Expect(2) = 5e-21
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = -1
Query: 491 QSANFPQFKAGEIPGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEARSLL 345
QS++FPQFK EI GIMKDF+EPGHLAPTGLHLGG KYMVIQGEA +++
Sbjct: 37 QSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVI 85
Score = 38.5 bits (88), Expect(2) = 5e-21
Identities = 18/22 (81%), Positives = 19/22 (85%)
Frame = -3
Query: 348 VIRGKKGSGGITIKKTGHSF*F 283
VIRGKKGSGGITIKKTG + F
Sbjct: 84 VIRGKKGSGGITIKKTGQALVF 105
>pdb|1CQA| Birch Pollen Profilin
Length = 133
Score = 83.6 bits (205), Expect(2) = 5e-21
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = -1
Query: 491 QSANFPQFKAGEIPGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEARSLL 345
QS++FPQFK EI GIMKDF+EPGHLAPTGLHLGG KYMVIQGEA +++
Sbjct: 37 QSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVI 85
Score = 38.5 bits (88), Expect(2) = 5e-21
Identities = 18/22 (81%), Positives = 19/22 (85%)
Frame = -3
Query: 348 VIRGKKGSGGITIKKTGHSF*F 283
VIRGKKGSGGITIKKTG + F
Sbjct: 84 VIRGKKGSGGITIKKTGQALVF 105
>sp|P35079|PRO1_PHLPR PROFILIN 1 (POLLEN ALLERGEN PHL P 11) (PHL P XI)
gi|542169|pir||JC2080 profilin - common timothy
gi|453976|emb|CAA54686.1| profilin [Phleum pratense]
Length = 131
Score = 76.6 bits (187), Expect(2) = 7e-20
Identities = 35/44 (79%), Positives = 38/44 (85%)
Frame = -1
Query: 491 QSANFPQFKAGEIPGIMKDFDEPGHLAPTGLHLGGTKYMVIQGE 360
QSA+FPQFK EI GIMKDFDEPGHLAPTG+ + G KYMVIQGE
Sbjct: 35 QSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGE 78
Score = 41.6 bits (96), Expect(2) = 7e-20
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -3
Query: 381 IHGNPGRGQEPVIRGKKGSGGITIKKTGHS 292
I G PGR VIRGKKG+GGITIKKTG +
Sbjct: 75 IQGEPGR----VIRGKKGAGGITIKKTGQA 100
>gb|AAL76933.1|AF456482_1 minor allergen Dau c 4 profilin [Daucus carota]
Length = 134
Score = 79.0 bits (193), Expect(2) = 1e-19
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = -1
Query: 491 QSANFPQFKAGEIPGIMKDFDEPGHLAPTGLHLGGTKYMVIQGE 360
QS+ FP+FK EI GIMK+FDEPGHLAPTGL+LGGTKYMVIQGE
Sbjct: 38 QSSTFPKFKPEEITGIMKNFDEPGHLAPTGLYLGGTKYMVIQGE 81
Score = 38.1 bits (87), Expect(2) = 1e-19
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -3
Query: 348 VIRGKKGSGGITIKKTGHSF*F 283
VIRGKKGSGG+TIKKTG + F
Sbjct: 85 VIRGKKGSGGVTIKKTGQALVF 106
>gb|AAL07320.1| profilin [Litchi chinensis]
Length = 131
Score = 86.7 bits (213), Expect = 1e-16
Identities = 47/82 (57%), Positives = 55/82 (66%), Gaps = 2/82 (2%)
Frame = -1
Query: 491 QSANFPQFKAGEIPGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEARSLL--SVGRRDLEV 318
QSANFPQFK EI IMKDFDEPG LAPTGLHLGGTKYMVIQGE +++ G + V
Sbjct: 35 QSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITV 94
Query: 317 SP*RKPVTASSLLALYD*TMLP 252
K T + ++ +YD M P
Sbjct: 95 ----KKTTQALIIGIYDEPMTP 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,523,948
Number of Sequences: 1393205
Number of extensions: 10175110
Number of successful extensions: 26843
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 25688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26791
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
