Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009114A_C01 KMC009114A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH35907.1| Similar to ubiquitin specific protease 27, X chro... 40 0.014
dbj|BAB03061.1| contains similarity to cell wall-plasma membrane... 39 0.055
ref|NP_188851.1| unknown protein; protein id: At3g22120.1 [Arabi... 39 0.055
dbj|BAB03062.1| contains similarity to cell wall-plasma membrane... 39 0.055
ref|NP_789072.1| putative integral membrane protein [Tropheryma ... 38 0.093
>gb|AAH35907.1| Similar to ubiquitin specific protease 27, X chromosome [Homo
sapiens]
Length = 308
Score = 40.4 bits (93), Expect = 0.014
Identities = 24/54 (44%), Positives = 29/54 (53%)
Frame = +3
Query: 387 IAPPPPRRCSASSSPHCSRRQNRNPP*SSRCPSQRPPS*LSCAPP*SSRSPHPP 548
+ P P RC +SSSP C RR+ R P R S+ P LS PP +R P PP
Sbjct: 83 VLPSIPLRCHSSSSPVCPRRKPRPRP-QPRARSRSQPG-LSAPPPPPARPPPPP 134
>dbj|BAB03061.1| contains similarity to cell wall-plasma membrane linker
protein~gene_id:MKA23.3 [Arabidopsis thaliana]
Length = 334
Score = 38.5 bits (88), Expect = 0.055
Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Frame = +3
Query: 195 PEKVGTQKWPERKTPILRQTLCDPPKKNHTKSHTSEPYPVPKRLTIRALHKK*R*S*PTL 374
P K K P K P ++ P K H K T +P+P P T++ H K PT
Sbjct: 54 PPKPPAVKPPTPKPPTVKPHPKPPTVKPHPKPPTVKPHPKPP--TVKPPHPK----PPTK 107
Query: 375 PAQLIAPP---PPRRCSASS-------SPHCSRRQNRNPP*SSRCPSQRPPS*LSCAPP* 524
P PP PP + S+ P + PP S+ P P C PP
Sbjct: 108 PHPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPKPPHHKPPPTPCPPP- 166
Query: 525 SSRSPHPPL 551
+ +P PP+
Sbjct: 167 -TPTPTPPV 174
>ref|NP_188851.1| unknown protein; protein id: At3g22120.1 [Arabidopsis thaliana]
Length = 351
Score = 38.5 bits (88), Expect = 0.055
Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Frame = +3
Query: 195 PEKVGTQKWPERKTPILRQTLCDPPKKNHTKSHTSEPYPVPKRLTIRALHKK*R*S*PTL 374
P K K P K P ++ P K H K T +P+P P T++ H K PT
Sbjct: 71 PPKPPAVKPPTPKPPTVKPHPKPPTVKPHPKPPTVKPHPKPP--TVKPPHPK----PPTK 124
Query: 375 PAQLIAPP---PPRRCSASS-------SPHCSRRQNRNPP*SSRCPSQRPPS*LSCAPP* 524
P PP PP + S+ P + PP S+ P P C PP
Sbjct: 125 PHPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPKPPHHKPPPTPCPPP- 183
Query: 525 SSRSPHPPL 551
+ +P PP+
Sbjct: 184 -TPTPTPPV 191
>dbj|BAB03062.1| contains similarity to cell wall-plasma membrane linker
protein~gene_id:MKA23.5 [Arabidopsis thaliana]
Length = 1480
Score = 38.5 bits (88), Expect = 0.055
Identities = 35/119 (29%), Positives = 49/119 (40%), Gaps = 2/119 (1%)
Frame = +3
Query: 195 PEKVGTQKWPERKTPILRQTLCDPPKKN-HTKSHTSEPYPVPKRLTIRALHKK*R*S*PT 371
P+ + P K P ++ PPK++ H K T +P+P PK T H K PT
Sbjct: 47 PKPPAVKPHPHPKPPTIKPP---PPKRHPHPKPPTVKPHPHPKPPTKPHPHPK----PPT 99
Query: 372 LPAQLIAPPPPRRCSASSSPHCSRRQNRNPP*SSRCPSQRPPS*LSCAP-P*SSRSPHP 545
P P P+ + PH R + PP P +PP+ P P + PHP
Sbjct: 100 KP-----HPHPKPPTIKPPPHPKPRPHPKPPNVKPHPHPKPPTKPHPHPKPPTKHHPHP 153
Score = 35.8 bits (81), Expect = 0.35
Identities = 32/117 (27%), Positives = 44/117 (37%)
Frame = +3
Query: 201 KVGTQKWPERKTPILRQTLCDPPKKNHTKSHTSEPYPVPKRLTIRALHKK*R*S*PTLPA 380
K T+ P K P ++ P + H K +P+P PK T H K P
Sbjct: 96 KPPTKPHPHPKPPTIKPPP-HPKPRPHPKPPNVKPHPHPKPPTKPHPHPKPPTKHHPHPK 154
Query: 381 QLIAPPPPRRCSASSSPHCSRRQNRNPP*SSRCPSQRPPS*LSCAPP*SSRSPHPPL 551
PPP+ S P + NPP S+ P P + PP +S PP+
Sbjct: 155 PPTIKPPPKPPSVKPPPSTPKPPTTNPPPSTPQPPTHKPPPCTPTPPVAS----PPM 207
>ref|NP_789072.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
gi|28410423|emb|CAD66809.1| putative integral membrane
protein [Tropheryma whipplei TW08/27]
Length = 701
Score = 37.7 bits (86), Expect = 0.093
Identities = 22/62 (35%), Positives = 35/62 (55%), Gaps = 1/62 (1%)
Frame = -2
Query: 293 VAFCVVFFRRITESLSEYRGLSFRPFL-GADFLWITVYLILLLIVLGCIFLPAGILLGVT 117
V F + F +TE +E+ GL+F +L G F+WI V ++LLI L +F I + V
Sbjct: 90 VVFFCILFAFLTEK-AEFSGLNFETYLTGPGFVWIIVLALVLLISLALLFCKKRIQIAVI 148
Query: 116 AS 111
++
Sbjct: 149 ST 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,955,840
Number of Sequences: 1393205
Number of extensions: 12584262
Number of successful extensions: 59611
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 48297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57030
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
