Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009095A_C01 KMC009095A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566176.1| Expressed protein; protein id: At3g02555.1, sup... 47 1e-04
pir||T51481 hypothetical protein T21H19_30 - Arabidopsis thalian... 43 0.002
ref|NP_568326.1| putative protein; protein id: At5g16110.1, supp... 43 0.002
ref|NP_564931.1| expressed protein; protein id: At1g68490.1, sup... 37 0.14
gb|EAA18580.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.30
>ref|NP_566176.1| Expressed protein; protein id: At3g02555.1, supported by cDNA:
1232. [Arabidopsis thaliana] gi|21537194|gb|AAM61535.1|
unknown [Arabidopsis thaliana]
Length = 162
Score = 47.4 bits (111), Expect = 1e-04
Identities = 22/29 (75%), Positives = 24/29 (81%)
Frame = -3
Query: 516 FGHKPAPVRVEGFDCLSRDRQNSGITAVA 430
FG KPA VRVEGFDCL+RDR NS I A+A
Sbjct: 134 FGVKPATVRVEGFDCLNRDRPNSSIPAMA 162
>pir||T51481 hypothetical protein T21H19_30 - Arabidopsis thaliana
gi|9755821|emb|CAC01852.1| putative protein [Arabidopsis
thaliana]
Length = 244
Score = 42.7 bits (99), Expect = 0.002
Identities = 20/29 (68%), Positives = 22/29 (74%)
Frame = -3
Query: 516 FGHKPAPVRVEGFDCLSRDRQNSGITAVA 430
FG VRVEGFDCL+RDRQNS I A+A
Sbjct: 216 FGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244
>ref|NP_568326.1| putative protein; protein id: At5g16110.1, supported by cDNA:
gi_13358202, supported by cDNA: gi_15809951 [Arabidopsis
thaliana] gi|11762168|gb|AAG40362.1|AF325010_1 AT5g16110
[Arabidopsis thaliana] gi|15809952|gb|AAL06903.1|
AT5g16110/T21H19_30 [Arabidopsis thaliana]
Length = 178
Score = 42.7 bits (99), Expect = 0.002
Identities = 20/29 (68%), Positives = 22/29 (74%)
Frame = -3
Query: 516 FGHKPAPVRVEGFDCLSRDRQNSGITAVA 430
FG VRVEGFDCL+RDRQNS I A+A
Sbjct: 150 FGLNSPAVRVEGFDCLNRDRQNSSIPAMA 178
>ref|NP_564931.1| expressed protein; protein id: At1g68490.1, supported by cDNA:
37060. [Arabidopsis thaliana] gi|25404742|pir||A96709
unknown protein, 35272-36292 [imported] - Arabidopsis
thaliana gi|12324888|gb|AAG52398.1|AC011915_12 unknown
protein; 35272-36292 [Arabidopsis thaliana]
gi|21593205|gb|AAM65154.1| unknown [Arabidopsis
thaliana] gi|29028824|gb|AAO64791.1| At1g68490
[Arabidopsis thaliana]
Length = 183
Score = 37.0 bits (84), Expect = 0.14
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -3
Query: 516 FGHKPAPVRVEGFDCLSRDRQNSGITAVA 430
FG+ P VRVEGFDCL RD +N I A+A
Sbjct: 156 FGNSPK-VRVEGFDCLDRDSRNCSIPALA 183
>gb|EAA18580.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 635
Score = 35.8 bits (81), Expect = 0.30
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 27 DQINKSNK*TLKVTEIYLQGTITKITNSIQNILVVIT*NILRHSNIRIILHKNEL 191
+ INK K TE Y Q I T S+ NI+ ++ IL +SN + L KN L
Sbjct: 458 ENINKIIKSIYTYTEFYEQNVINICTKSMGNIIAIVDSTILAYSNKEVNLLKNNL 512
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,138,520
Number of Sequences: 1393205
Number of extensions: 8480211
Number of successful extensions: 19814
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19584
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
