Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009082A_C01 KMC009082A_c01
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190477.1| 30S ribosomal protein S9 -like; protein id: At3... 148 5e-35
gb|AAM98204.1| unknown protein [Arabidopsis thaliana] 148 5e-35
dbj|BAC15475.1| 30S ribosomal protein S9-like protein~contains E... 140 1e-32
pir||T46122 30S ribosomal protein S9-like - Arabidopsis thaliana... 111 7e-24
ref|NP_771602.1| 30S ribosomal protein S9 [Bradyrhizobium japoni... 107 1e-22
>ref|NP_190477.1| 30S ribosomal protein S9 -like; protein id: At3g49080.1
[Arabidopsis thaliana]
Length = 143
Score = 148 bits (374), Expect = 5e-35
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = -1
Query: 651 LLRPFSETKTLGLWDVTCTVKGGGVSGQVGAIRLGISKALQNWEPDLRPPLRNAGFLTRD 472
LLRP +ETKTLG WD+ CTVKGGG +GQVGAI+LGIS+ALQNWEPD+R LR AGFLTRD
Sbjct: 61 LLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRD 120
Query: 471 SRVVERKKPGKAKARKSFQWVKR 403
SRVVERKKPGKAKARKSFQWVKR
Sbjct: 121 SRVVERKKPGKAKARKSFQWVKR 143
>gb|AAM98204.1| unknown protein [Arabidopsis thaliana]
Length = 430
Score = 148 bits (374), Expect = 5e-35
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = -1
Query: 651 LLRPFSETKTLGLWDVTCTVKGGGVSGQVGAIRLGISKALQNWEPDLRPPLRNAGFLTRD 472
LLRP +ETKTLG WD+ CTVKGGG +GQVGAI+LGIS+ALQNWEPD+R LR AGFLTRD
Sbjct: 348 LLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRD 407
Query: 471 SRVVERKKPGKAKARKSFQWVKR 403
SRVVERKKPGKAKARKSFQWVKR
Sbjct: 408 SRVVERKKPGKAKARKSFQWVKR 430
>dbj|BAC15475.1| 30S ribosomal protein S9-like protein~contains ESTs
C96952(C50186),AU108714(C50186) [Oryza sativa (japonica
cultivar-group)] gi|22831286|dbj|BAC16141.1| 30S
ribosomal protein S9-like protein~contains ESTs
C96952(C50186),AU108714(C50186) [Oryza sativa (japonica
cultivar-group)]
Length = 429
Score = 140 bits (354), Expect = 1e-32
Identities = 72/82 (87%), Positives = 76/82 (91%)
Frame = -1
Query: 651 LLRPFSETKTLGLWDVTCTVKGGGVSGQVGAIRLGISKALQNWEPDLRPPLRNAGFLTRD 472
LLRPF+ TKTLG WDVTCTVKGGGVS QVGAIRLGIS+ALQNWEP LRP L+ AG+LTRD
Sbjct: 332 LLRPFTVTKTLGRWDVTCTVKGGGVS-QVGAIRLGISRALQNWEPGLRPNLK-AGYLTRD 389
Query: 471 SRVVERKKPGKAKARKSFQWVK 406
SRVVERKKPGKAKARKSFQWVK
Sbjct: 390 SRVVERKKPGKAKARKSFQWVK 411
>pir||T46122 30S ribosomal protein S9-like - Arabidopsis thaliana
gi|6522558|emb|CAB62002.1| 30S ribosomal protein S9-like
[Arabidopsis thaliana]
Length = 143
Score = 111 bits (278), Expect = 7e-24
Identities = 56/83 (67%), Positives = 62/83 (74%)
Frame = -1
Query: 651 LLRPFSETKTLGLWDVTCTVKGGGVSGQVGAIRLGISKALQNWEPDLRPPLRNAGFLTRD 472
LLRP +ETKTLG WD+ CTVKGGG +G+ L + L D+R LR AGFLTRD
Sbjct: 61 LLRPLAETKTLGRWDIKCTVKGGGTTGKTSPQSLRFLRRLVPKFSDMRTSLRAAGFLTRD 120
Query: 471 SRVVERKKPGKAKARKSFQWVKR 403
SRVVERKKPGKAKARKSFQWVKR
Sbjct: 121 SRVVERKKPGKAKARKSFQWVKR 143
>ref|NP_771602.1| 30S ribosomal protein S9 [Bradyrhizobium japonicum]
gi|27353227|dbj|BAC50227.1| 30S ribosomal protein S9
[Bradyrhizobium japonicum USDA 110]
Length = 159
Score = 107 bits (267), Expect = 1e-22
Identities = 54/81 (66%), Positives = 64/81 (78%)
Frame = -1
Query: 645 RPFSETKTLGLWDVTCTVKGGGVSGQVGAIRLGISKALQNWEPDLRPPLRNAGFLTRDSR 466
+PFS + G +DV CTV GGG+SGQ GA+R GISKAL +EP+LR L+ GFLTRDSR
Sbjct: 79 QPFSVAQRSGQYDVICTVAGGGLSGQAGAVRHGISKALTYFEPELRTVLKKGGFLTRDSR 138
Query: 465 VVERKKPGKAKARKSFQWVKR 403
VVERKK GKAKAR+SFQ+ KR
Sbjct: 139 VVERKKYGKAKARRSFQFSKR 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,257,722
Number of Sequences: 1393205
Number of extensions: 11662479
Number of successful extensions: 29883
Number of sequences better than 10.0: 184
Number of HSP's better than 10.0 without gapping: 28671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29841
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
