Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009074A_C01 KMC009074A_c01
(715 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176974.1| putative RING zinc finger protein; protein id: ... 130 2e-29
gb|AAM61051.1| putative RING zinc finger protein [Arabidopsis th... 130 2e-29
gb|AAN87884.1| RES protein [Arabidopsis thaliana] 122 5e-27
dbj|BAC07025.1| contains EST AU069790(E3307)~similar to Arabidop... 107 2e-22
ref|NP_567379.1| putative protein; protein id: At4g11680.1, supp... 105 5e-22
>ref|NP_176974.1| putative RING zinc finger protein; protein id: At1g68070.1,
supported by cDNA: 109181. [Arabidopsis thaliana]
gi|25404696|pir||H96703 probable RING zinc finger
protein T23K23.8 [imported] - Arabidopsis thaliana
gi|12324089|gb|AAG52017.1|AC012563_27 putative RING zinc
finger protein; 27623-28978 [Arabidopsis thaliana]
Length = 343
Score = 130 bits (326), Expect = 2e-29
Identities = 56/62 (90%), Positives = 59/62 (94%)
Frame = -3
Query: 704 NERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 525
NER L PEDA+CCIC+SSYEDGAEL SLPCNHHFHSTCIVKWLKMNATCPLCK+NILKGN
Sbjct: 281 NERVLLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGN 340
Query: 524 EQ 519
EQ
Sbjct: 341 EQ 342
>gb|AAM61051.1| putative RING zinc finger protein [Arabidopsis thaliana]
Length = 343
Score = 130 bits (326), Expect = 2e-29
Identities = 56/62 (90%), Positives = 59/62 (94%)
Frame = -3
Query: 704 NERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 525
NER L PEDA+CCIC+SSYEDGAEL SLPCNHHFHSTCIVKWLKMNATCPLCK+NILKGN
Sbjct: 281 NERVLLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGN 340
Query: 524 EQ 519
EQ
Sbjct: 341 EQ 342
>gb|AAN87884.1| RES protein [Arabidopsis thaliana]
Length = 359
Score = 122 bits (306), Expect = 5e-27
Identities = 52/60 (86%), Positives = 55/60 (91%)
Frame = -3
Query: 707 ANERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVKWLKMNATCPLCKYNILKG 528
A ER L EDA+CCIC+SSYEDGAELH+LPCNHHFHSTCIVKWLKM ATCPLCKYNILKG
Sbjct: 295 ATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKG 354
>dbj|BAC07025.1| contains EST AU069790(E3307)~similar to Arabidopsis thaliana
chromosome1,T12C24.29~unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 359
Score = 107 bits (266), Expect = 2e-22
Identities = 45/62 (72%), Positives = 49/62 (78%)
Frame = -3
Query: 710 PANERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVKWLKMNATCPLCKYNILK 531
P E LS EDAECCIC+ YEDGAEL LPCNHHFH TCI KWL +NATCPLCK+NI+K
Sbjct: 292 PPVEHFLSAEDAECCICLCPYEDGAELRELPCNHHFHCTCIDKWLHINATCPLCKFNIIK 351
Query: 530 GN 525
N
Sbjct: 352 SN 353
>ref|NP_567379.1| putative protein; protein id: At4g11680.1, supported by cDNA:
gi_16323217 [Arabidopsis thaliana]
gi|16323218|gb|AAL15343.1| AT4g11680/T5C23_110
[Arabidopsis thaliana]
Length = 390
Score = 105 bits (263), Expect = 5e-22
Identities = 43/57 (75%), Positives = 48/57 (83%)
Frame = -3
Query: 701 ERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVKWLKMNATCPLCKYNILK 531
ER+LSPEDAECCIC+ YEDG EL LPCNHHFH TCI KWL +N+ CPLCK+NILK
Sbjct: 328 ERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,929,154
Number of Sequences: 1393205
Number of extensions: 13610198
Number of successful extensions: 30233
Number of sequences better than 10.0: 1278
Number of HSP's better than 10.0 without gapping: 29092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29997
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
