Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009068A_C01 KMC009068A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567368.1| expressed protein; protein id: At4g10910.1, sup... 40 0.020
ref|NP_191751.1| putative protein; protein id: At3g61920.1, supp... 37 0.097
ref|XP_240032.1| hypothetical protein XP_240032 [Rattus norvegicus] 32 4.1
ref|NP_766406.1| RIKEN cDNA 1700019P01 [Mus musculus] gi|2632613... 32 5.3
dbj|BAC26595.1| unnamed protein product [Mus musculus] 32 5.3
>ref|NP_567368.1| expressed protein; protein id: At4g10910.1, supported by cDNA:
1732. [Arabidopsis thaliana] gi|7459223|pir||T04286
hypothetical protein F25I24.120 - Arabidopsis thaliana
gi|4539365|emb|CAB40059.1| hypothetical protein
[Arabidopsis thaliana] gi|7267789|emb|CAB81192.1|
hypothetical protein [Arabidopsis thaliana]
gi|21553841|gb|AAM62934.1| unknown [Arabidopsis
thaliana] gi|26453086|dbj|BAC43619.1| unknown protein
[Arabidopsis thaliana] gi|28827298|gb|AAO50493.1|
unknown protein [Arabidopsis thaliana]
Length = 136
Score = 39.7 bits (91), Expect = 0.020
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = -1
Query: 505 RVKLVIDTRQLEEILSEQVNTEALIEKMRMAATTC--SATSPARSSRTMSI 359
+ K+VI ++QLEEIL+ + NT ALI+++R AA S+TS + R S+
Sbjct: 78 KAKVVIGSKQLEEILAVEGNTHALIDQLRFAAAEALVSSTSASEMVRVKSL 128
>ref|NP_191751.1| putative protein; protein id: At3g61920.1, supported by cDNA:
gi_17065043 [Arabidopsis thaliana]
gi|11281203|pir||T47984 hypothetical protein F21F14.90 -
Arabidopsis thaliana gi|6899890|emb|CAB71899.1| putative
protein [Arabidopsis thaliana]
gi|17065044|gb|AAL32676.1| putative protein [Arabidopsis
thaliana]
Length = 187
Score = 37.4 bits (85), Expect = 0.097
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 505 RVKLVIDTRQLEEILSEQVNTEALIEKMRMAA 410
+V+LVI QL EIL+E V TEAL+E +R A
Sbjct: 125 KVRLVISPEQLAEILAEDVETEALVESVRTVA 156
>ref|XP_240032.1| hypothetical protein XP_240032 [Rattus norvegicus]
Length = 197
Score = 32.0 bits (71), Expect = 4.1
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +2
Query: 311 LTRFSIEECWLPPHFPNAHGSAAPGRASSRACSCSHSHLLNQSFSIHLL 457
L+RF + WLPP A G APG SS + HLL H+L
Sbjct: 77 LSRFPVTSTWLPPAGQEAKGHYAPG--SSPCKAWDRIHLLPVKLLSHIL 123
>ref|NP_766406.1| RIKEN cDNA 1700019P01 [Mus musculus] gi|26326135|dbj|BAC26811.1|
unnamed protein product [Mus musculus]
Length = 781
Score = 31.6 bits (70), Expect = 5.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 398 CY*PCQEQQNHEHLES---GVEANTLQWKIL*EHYCCRIK 288
CY C E + E L+ V A+ L+W +L ++YC ++K
Sbjct: 186 CYGLCTESEKQEFLDDFRRTVAASILKWVVLHQNYCSKVK 225
>dbj|BAC26595.1| unnamed protein product [Mus musculus]
Length = 518
Score = 31.6 bits (70), Expect = 5.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 398 CY*PCQEQQNHEHLES---GVEANTLQWKIL*EHYCCRIK 288
CY C E + E L+ V A+ L+W +L ++YC ++K
Sbjct: 39 CYGLCTESEKQEFLDDFRRTVAASILKWVVLHQNYCSKVK 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,257,065
Number of Sequences: 1393205
Number of extensions: 7869656
Number of successful extensions: 20195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20189
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
