Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009063A_C01 KMC009063A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD23248.1| squalene monooxygenase 2 [Medicago truncatula] 155 3e-37
emb|CAD23249.1| squalene monooxygenase 1 [Medicago truncatula] 143 8e-34
gb|AAO00686.1| Putative Squalene monooxygenase [Oryza sativa (ja... 141 3e-33
sp|O48651|ERG1_PANGI Squalene monooxygenase (Squalene epoxidase)... 140 5e-33
ref|NP_564734.1| squalene monooxygenase, putative; protein id: A... 135 3e-31
>emb|CAD23248.1| squalene monooxygenase 2 [Medicago truncatula]
Length = 526
Score = 155 bits (391), Expect = 3e-37
Identities = 75/78 (96%), Positives = 77/78 (98%)
Frame = -3
Query: 475 LLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRIWIGARLLTGASGIILPIIKAEGI 296
LLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKR+WIGARLL+GASGIILPIIKAEGI
Sbjct: 446 LLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRVWIGARLLSGASGIILPIIKAEGI 505
Query: 295 RQMFFPATVPAYYRTPPV 242
RQMFFPATVPAYYR PPV
Sbjct: 506 RQMFFPATVPAYYRAPPV 523
>emb|CAD23249.1| squalene monooxygenase 1 [Medicago truncatula]
Length = 519
Score = 143 bits (361), Expect = 8e-34
Identities = 69/79 (87%), Positives = 73/79 (92%)
Frame = -3
Query: 475 LLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRIWIGARLLTGASGIILPIIKAEGI 296
LLSGLNP PLSLVLHFFAVA++GVGRLLLPFPSPKR+WIG RL+ ASGIILPIIKAEGI
Sbjct: 441 LLSGLNPCPLSLVLHFFAVAIYGVGRLLLPFPSPKRLWIGIRLIASASGIILPIIKAEGI 500
Query: 295 RQMFFPATVPAYYRTPPVA 239
RQMFFPATVPAYYR PP A
Sbjct: 501 RQMFFPATVPAYYRAPPDA 519
>gb|AAO00686.1| Putative Squalene monooxygenase [Oryza sativa (japonica
cultivar-group)]
Length = 522
Score = 141 bits (356), Expect = 3e-33
Identities = 66/80 (82%), Positives = 73/80 (90%)
Frame = -3
Query: 475 LLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRIWIGARLLTGASGIILPIIKAEGI 296
LLSGLNPRPLSLV HFFAVA++GVGRL+LP PSPKR+WIGARL++GA GII PIIKAEG+
Sbjct: 443 LLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVPSPKRMWIGARLVSGACGIIFPIIKAEGV 502
Query: 295 RQMFFPATVPAYYRTPPVAE 236
RQMFFPATVPAYYR PP E
Sbjct: 503 RQMFFPATVPAYYRAPPPME 522
>sp|O48651|ERG1_PANGI Squalene monooxygenase (Squalene epoxidase) (SE)
gi|2804278|dbj|BAA24448.1| squalene epoxidase [Panax
ginseng]
Length = 539
Score = 140 bits (354), Expect = 5e-33
Identities = 63/78 (80%), Positives = 73/78 (92%)
Frame = -3
Query: 475 LLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRIWIGARLLTGASGIILPIIKAEGI 296
LLSGLNPRP+SL LHFFAVA++GVGRLL+PFPSPKR+W+GARL+ GASGII PIIK+EG+
Sbjct: 461 LLSGLNPRPISLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGL 520
Query: 295 RQMFFPATVPAYYRTPPV 242
RQMFFPA VPAYYR PP+
Sbjct: 521 RQMFFPAIVPAYYRAPPI 538
>ref|NP_564734.1| squalene monooxygenase, putative; protein id: At1g58440.1
[Arabidopsis thaliana] gi|25455713|pir||T52462
hypothetical protein XF1 [imported] - Arabidopsis
thaliana gi|6566342|dbj|BAA88268.1| similar to squalene
monooxygenase [Arabidopsis thaliana]
gi|18181937|dbj|BAB83875.1| squalene monooxygenase
[Arabidopsis thaliana] gi|20466354|gb|AAM20494.1|
squalene monooxygenase, putative [Arabidopsis thaliana]
gi|23198062|gb|AAN15558.1| squalene monooxygenase,
putative [Arabidopsis thaliana]
Length = 531
Score = 135 bits (339), Expect = 3e-31
Identities = 65/81 (80%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = -3
Query: 475 LLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRIWIGARLLTGASGIILPIIKAEGI 296
LLSGLNPRPL+LV HFFAVAV+GV RLL+PFPSPKRIW+GA+L++GASGII PIIKAEG+
Sbjct: 447 LLSGLNPRPLTLVCHFFAVAVYGVIRLLIPFPSPKRIWLGAKLISGASGIIFPIIKAEGV 506
Query: 295 RQMFFPATVPA-YYRTPPVAE 236
RQMFFPATVPA YY+ P V E
Sbjct: 507 RQMFFPATVPAYYYKAPTVGE 527
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,107,858
Number of Sequences: 1393205
Number of extensions: 9374051
Number of successful extensions: 25288
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 24419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25234
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
