Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009057A_C01 KMC009057A_c01
(708 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564347.1| expressed protein; protein id: At1g30090.1, sup... 189 4e-47
gb|AAG52060.1|AC022455_14 hypohetical protein; 81957-81622 [Arab... 154 9e-37
gb|AAM65112.1| unknown [Arabidopsis thaliana] 100 2e-20
ref|NP_565572.1| expressed protein; protein id: At2g24540.1, sup... 99 4e-20
ref|NP_173623.1| hypothetical protein; protein id: At1g22040.1 [... 58 1e-07
>ref|NP_564347.1| expressed protein; protein id: At1g30090.1, supported by cDNA:
gi_16209716 [Arabidopsis thaliana]
gi|25403102|pir||H86424 unknown protein [imported] -
Arabidopsis thaliana
gi|12321630|gb|AAG50856.1|AC074176_5 unknown protein
[Arabidopsis thaliana] gi|16209717|gb|AAL14414.1|
At1g30090/T2H7_11 [Arabidopsis thaliana]
gi|27363226|gb|AAO11532.1| At1g30090/T2H7_11
[Arabidopsis thaliana]
Length = 398
Score = 189 bits (479), Expect = 4e-47
Identities = 88/138 (63%), Positives = 111/138 (79%)
Frame = -2
Query: 707 VSPRGQVYDPRTNNWESMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYDPETDSWEA 528
VSPRGQVYDPRT+ WE+M++GLREGWTG+SVV+Y LF+VSELERMK+KVYDP TDSWE
Sbjct: 269 VSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWET 328
Query: 527 IEGPPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISRLNLKESCEGKRKFSVPWHVID 348
I GP LPEQIC+PFAVN ++YVVGRNL +AVG+I + + KF+V W V++
Sbjct: 329 INGPELPEQICRPFAVNCYGNRVYVVGRNLHLAVGNI--------WQSENKFAVRWEVVE 380
Query: 347 APESLSDLTPSSSQVLFA 294
+PE +D+TPS+SQ+LFA
Sbjct: 381 SPERYADITPSNSQILFA 398
>gb|AAG52060.1|AC022455_14 hypohetical protein; 81957-81622 [Arabidopsis thaliana]
Length = 111
Score = 154 bits (390), Expect = 9e-37
Identities = 73/119 (61%), Positives = 93/119 (77%)
Frame = -2
Query: 650 VGLREGWTGSSVVVYGHLFVVSELERMKLKVYDPETDSWEAIEGPPLPEQICKPFAVNAC 471
+GLREGWTG+SVV+Y LF+VSELERMK+KVYDP TDSWE I GP LPEQIC+PFAVN
Sbjct: 1 MGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCY 60
Query: 470 DCQIYVVGRNLLVAVGHISRLNLKESCEGKRKFSVPWHVIDAPESLSDLTPSSSQVLFA 294
++YVVGRNL +AVG+I + + KF+V W V+++PE +D+TPS+SQ+LFA
Sbjct: 61 GNRVYVVGRNLHLAVGNI--------WQSENKFAVRWEVVESPERYADITPSNSQILFA 111
>gb|AAM65112.1| unknown [Arabidopsis thaliana]
Length = 372
Score = 100 bits (250), Expect = 2e-20
Identities = 53/137 (38%), Positives = 79/137 (56%), Gaps = 2/137 (1%)
Frame = -2
Query: 701 PRGQVYDPRTNNWESMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYDPETDSWEAIE 522
P G+VYD W M+ G++EGWTG SVV+ LFV+SE +KVY + D+W +
Sbjct: 243 PMGEVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVS 302
Query: 521 GPPLP-EQICKPFAVNACDCQIYVVGRNLLVAVGHISRLNLKESCEGKR-KFSVPWHVID 348
G LP E++ +PFAV D +++VV + VA G +S EG+ FSV W ++
Sbjct: 303 GEKLPGEKMRRPFAVTGADDRVFVVASGINVAEGRVS--------EGQNGDFSVEWKMVS 354
Query: 347 APESLSDLTPSSSQVLF 297
+P+S +P+S VL+
Sbjct: 355 SPKSSIQFSPASCHVLY 371
>ref|NP_565572.1| expressed protein; protein id: At2g24540.1, supported by cDNA:
36719., supported by cDNA: gi_18086558 [Arabidopsis
thaliana] gi|25412221|pir||H84637 hypothetical protein
At2g24540 [imported] - Arabidopsis thaliana
gi|4572676|gb|AAD23891.1| expressed protein [Arabidopsis
thaliana] gi|18086559|gb|AAL57704.1| At2g24540/F25P17.16
[Arabidopsis thaliana] gi|23507761|gb|AAN38684.1|
At2g24540/F25P17.16 [Arabidopsis thaliana]
Length = 372
Score = 99.4 bits (246), Expect = 4e-20
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Frame = -2
Query: 701 PRGQVYDPRTNNWESMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYDPETDSWEAIE 522
P GQVYD W M+ G++EGWTG SVV+ LFV+SE +KVY + D+W +
Sbjct: 243 PMGQVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVS 302
Query: 521 GPPLP-EQICKPFAVNACDCQIYVVGRNLLVAVGHISRLNLKESCEGKR-KFSVPWHVID 348
G L E++ +PFAV D +++VV + VA G +S EG+ FSV W ++
Sbjct: 303 GEKLQGEKMRRPFAVTGADDRVFVVASGINVAEGRVS--------EGQNGDFSVEWRMVS 354
Query: 347 APESLSDLTPSSSQVLF 297
+P+S +P+S VL+
Sbjct: 355 SPKSSIQFSPASCHVLY 371
>ref|NP_173623.1| hypothetical protein; protein id: At1g22040.1 [Arabidopsis
thaliana] gi|9280679|gb|AAF86548.1|AC069252_7 F2E2.11
[Arabidopsis thaliana]
Length = 475
Score = 58.2 bits (139), Expect = 1e-07
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Frame = -2
Query: 695 GQVYDPRTNNWESMAVGLREGW------TGSSVVVYGHLFVV---SELERMKLKVYDPET 543
G+VYDP TN W M G+ EGW T SVVV G L+ S +E K+KVYD +
Sbjct: 313 GEVYDPETNLWVEMPSGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKE 372
Query: 542 DSWEAIEGPPLPEQIC---KPFAVNACDCQIYVVGR----NLLVAVGHISRLNLKESCEG 384
D+W+ + G + P+ + +++ + R N+ V + + + S
Sbjct: 373 DTWKVVIGEVPVYDLTDSESPYLLAGFHGKLHFITRDPNHNVTVLRADVPNIPVSSSSSS 432
Query: 383 KRKFSVPWHVIDAPESLSDLT 321
S+P +AP +T
Sbjct: 433 SSSVSIPHLKTNAPNKSDTVT 453
Score = 34.3 bits (77), Expect = 1.7
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = -2
Query: 686 YDPRTNNWESMAVGLREGWTGSSVVVYGHLFVVSELER--------MKLKVYDPETDSWE 531
+DP N+W ++ L + V+ L+VV ++R +VYDP TD+W
Sbjct: 201 FDPILNSWSEVSSMLASRAYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWS 260
Query: 530 AIEGPPLPEQICKPFA 483
+ P + P A
Sbjct: 261 EVPSMPFSKAQVLPNA 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,125,398
Number of Sequences: 1393205
Number of extensions: 12900895
Number of successful extensions: 32829
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 30738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32640
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
