Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009051A_C01 KMC009051A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JC6203 SP8 binding protein homolog - cucumber gi|927025|gb|... 124 1e-27
pir||T52092 DNA-binding protein WRKY2 [imported] - common tobacc... 103 1e-21
gb|AAF26166.1|AC008261_23 putative DNA-binding protein [Arabidop... 94 1e-18
sp|Q93WU7|WR58_ARATH Probable WRKY transcription factor 58 (WRKY... 94 1e-18
ref|NP_186757.2| WRKY family transcription factor; protein id: A... 94 1e-18
>pir||JC6203 SP8 binding protein homolog - cucumber gi|927025|gb|AAC37515.1|
SPF1-like DNA-binding protein [Cucumis sativus]
Length = 509
Score = 124 bits (310), Expect = 1e-27
Identities = 60/87 (68%), Positives = 71/87 (80%)
Frame = -2
Query: 577 GCNVRKHVERASTDAKAVITTYEGKHNHDVPAARNSSHNTASSNSMQPKPQNMGPEKHPL 398
GCNVRKHVER+STD+KAV+TTYEGKHNHDVPAARNSSH+T ++ KP + +KHPL
Sbjct: 425 GCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVHHIKPLKVVAQKHPL 484
Query: 397 LKDMDFGNNNNDQRPVHLRLKEEQIIV 317
LK+M+FG NDQRP L+LKEEQI V
Sbjct: 485 LKEMEFG--TNDQRPAVLQLKEEQITV 509
>pir||T52092 DNA-binding protein WRKY2 [imported] - common tobacco
gi|4322940|gb|AAD16139.1| DNA-binding protein 2
[Nicotiana tabacum]
Length = 528
Score = 103 bits (258), Expect = 1e-21
Identities = 52/86 (60%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = -2
Query: 577 GCNVRKHVERASTDAKAVITTYEGKHNHDVPAARNSSHNTASSNSMQPKPQNMGPEKHPL 398
GCNVRKHVERA +D KAVITTYEG+HNHDVPAARNSSHNT +++ Q +P N +K
Sbjct: 444 GCNVRKHVERAPSDPKAVITTYEGEHNHDVPAARNSSHNTTNNSVSQMRPHNPVVDKQDA 503
Query: 397 LKDMDFGNNNNDQRPVH-LRLKEEQI 323
+ + F +NN+Q+P+ LRLKEEQ+
Sbjct: 504 TRRIGF--SNNEQQPIALLRLKEEQV 527
Score = 33.5 bits (75), Expect = 2.0
Identities = 25/84 (29%), Positives = 38/84 (44%), Gaps = 1/84 (1%)
Frame = -2
Query: 574 CNVRKHVERASTDAKAVITTYEGKHNHDVPAARNSSHNTASSNSMQPKPQNMGPEKHPLL 395
C V+K VER S D + Y+G+HNH P SS + S + GP +
Sbjct: 265 CPVKKKVER-SLDGQVTEIIYKGQHNHQPP---QSSKRSKESGNPNGNYNLQGPSELSSE 320
Query: 394 KDMDFGNNNNDQRPVH-LRLKEEQ 326
NN+ D P + LR+ +++
Sbjct: 321 GVAGTLNNSKDSMPSYSLRMTDQE 344
>gb|AAF26166.1|AC008261_23 putative DNA-binding protein [Arabidopsis thaliana]
Length = 461
Score = 94.0 bits (232), Expect = 1e-18
Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = -2
Query: 574 CNVRKHVERASTDAKAVITTYEGKHNHDVPAARN-SSHNTASSNSMQPKPQNMGPEKHPL 398
C VRKHVERASTDAKAVITTYEGKHNHDVPAARN ++ TA++ + + +
Sbjct: 374 CTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAVGPSDHHRMRSMSGNNM 433
Query: 397 LKDMDFGNNNN-DQRPVHLRLKEEQIIV 317
+ M FGNNNN Q PV LRLKEE+I +
Sbjct: 434 QQHMSFGNNNNTGQSPVLLRLKEEKITI 461
>sp|Q93WU7|WR58_ARATH Probable WRKY transcription factor 58 (WRKY DNA-binding protein 58)
gi|16798366|gb|AAL29431.1|AF426254_1 WRKY transcription
factor 58 [Arabidopsis thaliana]
Length = 423
Score = 94.0 bits (232), Expect = 1e-18
Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = -2
Query: 574 CNVRKHVERASTDAKAVITTYEGKHNHDVPAARN-SSHNTASSNSMQPKPQNMGPEKHPL 398
C VRKHVERASTDAKAVITTYEGKHNHDVPAARN ++ TA++ + + +
Sbjct: 336 CTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAVGPSDHHRMRSMSGNNM 395
Query: 397 LKDMDFGNNNN-DQRPVHLRLKEEQIIV 317
+ M FGNNNN Q PV LRLKEE+I +
Sbjct: 396 QQHMSFGNNNNTGQSPVLLRLKEEKITI 423
>ref|NP_186757.2| WRKY family transcription factor; protein id: At3g01080.1,
supported by cDNA: gi_16798365 [Arabidopsis thaliana]
Length = 423
Score = 94.0 bits (232), Expect = 1e-18
Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = -2
Query: 574 CNVRKHVERASTDAKAVITTYEGKHNHDVPAARN-SSHNTASSNSMQPKPQNMGPEKHPL 398
C VRKHVERASTDAKAVITTYEGKHNHDVPAARN ++ TA++ + + +
Sbjct: 336 CTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAVGPSDHHRMRSMSGNNM 395
Query: 397 LKDMDFGNNNN-DQRPVHLRLKEEQIIV 317
+ M FGNNNN Q PV LRLKEE+I +
Sbjct: 396 QQHMSFGNNNNTGQSPVLLRLKEEKITI 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,928,493
Number of Sequences: 1393205
Number of extensions: 10420084
Number of successful extensions: 28190
Number of sequences better than 10.0: 201
Number of HSP's better than 10.0 without gapping: 27001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28108
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
