Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009041A_C01 KMC009041A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65300.1| unknown [Arabidopsis thaliana] 33 2.6
ref|NP_045342.1| UL15 protein [Bovine herpesvirus 1] gi|7444329|... 33 3.4
ref|XP_163474.1| hypothetical protein XP_163474 [Mus musculus] 32 5.7
ref|NP_198382.1| putative protein; protein id: At5g35320.1 [Arab... 31 9.8
ref|NP_126462.1| hypothetical protein [Pyrococcus abyssi] gi|751... 31 9.8
>gb|AAM65300.1| unknown [Arabidopsis thaliana]
Length = 225
Score = 33.1 bits (74), Expect = 2.6
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = -1
Query: 575 DDVMGEQEEGEGVMDIEEEQQDTAVGNAPSTSITNFPTTMNLPEGFQQQQQHCFLPHLPQ 396
DD E EE G+ + QQ + P QQ Q+C +P LPQ
Sbjct: 163 DDASNEIEEDTGITSLSFPQQGQQQEQEHTYGFGLHPW---------QQAQNCMIPQLPQ 213
Query: 395 SNSTPIPWT 369
++TP P T
Sbjct: 214 VSATPTPIT 222
>ref|NP_045342.1| UL15 protein [Bovine herpesvirus 1] gi|7444329|pir||S61238
hypothetical protein - bovine herpesvirus 1
gi|971317|emb|CAA88116.1| UL15 [Bovine herpesvirus 1]
gi|2653331|emb|CAA06117.1| UL15 protein [Bovine
herpesvirus type 1.1]
Length = 735
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -1
Query: 425 QHCFLPHLPQSNSTPIPWTR*NITCFEAVVAVHNRMLDSL 306
+H FLP L S++ I R + CF V+AVH R LD L
Sbjct: 538 EHFFLPALTGSSAAEI--ARCAVRCFAQVMAVHRRRLDGL 575
>ref|XP_163474.1| hypothetical protein XP_163474 [Mus musculus]
Length = 174
Score = 32.0 bits (71), Expect = 5.7
Identities = 27/82 (32%), Positives = 35/82 (41%)
Frame = +2
Query: 5 ECNTLKLCIPDQCRHENTSKKKVEKAYRLVHSLAKLGWPTENVRN*HSHPIHGYTVTNID 184
E T P +CRH S++ V S+ + G T+ SHP G++ N
Sbjct: 68 ELTTTTFPQPPECRHTTHSQQWV--------SVGRTG-STDGYNEHSSHP--GFSFVNAV 116
Query: 185 NDQPTPSTLVRKTTKPRDGSNP 250
N PTP L KTT PR P
Sbjct: 117 NG-PTPEVLHYKTTVPRATPGP 137
>ref|NP_198382.1| putative protein; protein id: At5g35320.1 [Arabidopsis thaliana]
gi|7460218|pir||T01175 hypothetical protein T26D22.2 -
Arabidopsis thaliana gi|3047092|gb|AAC13604.1| T26D22.2
gene product [Arabidopsis thaliana]
gi|10178092|dbj|BAB11479.1|
gene_id:MVP2.1~pir||T01175~strong similarity to unknown
protein [Arabidopsis thaliana]
gi|18377775|gb|AAL67037.1| unknown protein [Arabidopsis
thaliana] gi|21436067|gb|AAM51234.1| unknown protein
[Arabidopsis thaliana]
Length = 225
Score = 31.2 bits (69), Expect = 9.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 434 QQQQHCFLPHLPQSNSTPIPWT 369
QQ Q+C +P LPQ ++TP P T
Sbjct: 201 QQAQNCMIPQLPQVSTTPTPIT 222
>ref|NP_126462.1| hypothetical protein [Pyrococcus abyssi] gi|7518385|pir||D75122
hypothetical protein PAB2446 - Pyrococcus abyssi (strain
Orsay) gi|5458204|emb|CAB49693.1| Hypothetical protein
[Pyrococcus abyssi]
Length = 727
Score = 31.2 bits (69), Expect = 9.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 500 GNAPSTSITNFPTTMNLPEGFQQQQQHCFLPHLPQSNSTPIPWT 369
GNAP +TN T+N P+G++ + +P LP + +P T
Sbjct: 623 GNAP---LTNIKITVNGPQGWEIRVDKSLIPSLPPKGNVNVPIT 663
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,626,652
Number of Sequences: 1393205
Number of extensions: 10784263
Number of successful extensions: 33936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33773
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
