Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009040A_C01 KMC009040A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79817.1|AC007396_17 T4O12.27 [Arabidopsis thaliana] 84 1e-15
gb|EAA00691.1| ebiP8809 [Anopheles gambiae str. PEST] 35 0.79
gb|EAA05053.1| agCP6923 [Anopheles gambiae str. PEST] 34 1.3
ref|NP_701420.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.3
gb|AAM45320.2| similar to Mus musculus (Mouse). Colon RCB-0549 C... 33 1.8
>gb|AAF79817.1|AC007396_17 T4O12.27 [Arabidopsis thaliana]
Length = 80
Score = 83.6 bits (205), Expect = 1e-15
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = -2
Query: 344 MHCTAELRQTVRQEMENNRNCNDKPRIRYLISDGLERLKRLDEMLDMQGH 195
+H EL+QTVRQEME NR+CNDK +IRYLIS+GLER+K LDEMLDMQGH
Sbjct: 31 VHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEGLERIKGLDEMLDMQGH 80
>gb|EAA00691.1| ebiP8809 [Anopheles gambiae str. PEST]
Length = 74
Score = 34.7 bits (78), Expect = 0.79
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = -2
Query: 329 ELRQTVRQEMENNRNCNDKPRIRYLISDGLERLKRLDEMLDMQG 198
ELR R + NNRN D+ I+ L+ G LK L L++ G
Sbjct: 30 ELRDWARADFRNNRNQTDELAIKMLLQHGNRSLKELQTSLELSG 73
>gb|EAA05053.1| agCP6923 [Anopheles gambiae str. PEST]
Length = 265
Score = 33.9 bits (76), Expect = 1.3
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = -3
Query: 154 VYSFSFYLFFKALFLTCVLEF*VPFLFYEMLFLTCLSSK 38
+Y F+ YL F+ LFL VL VP ++++ L LT L K
Sbjct: 82 IYGFALYLLFQTLFLLYVLWAFVPTVWFDRLGLTYLPDK 120
>ref|NP_701420.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496586|gb|AAN36144.1|AE014844_55 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1785
Score = 33.9 bits (76), Expect = 1.3
Identities = 29/112 (25%), Positives = 45/112 (39%), Gaps = 1/112 (0%)
Frame = +3
Query: 51 HVRNNIS*NRNGTQNSSTHVKNNALKNK*NENEYTFKVIVP*YILTLSMTLHIKHFIQSF 230
H NN + N N NS+ + NN N N N + + + + H +
Sbjct: 998 HTNNNNNNNNNNNNNSNNNSNNNNSNNN-NNNNSNNNSNNNNHSSSSNNAPNSSHANNNH 1056
Query: 231 QSFQSITNQVTNPWLVIAVS-IIFHLLSNCLSQFSCTMHYISSNVINVIYMY 383
+ +I N N + +S +H S + FS MH +N+IN IY Y
Sbjct: 1057 SNDNNINNNYRNNHVHTCISNNSYHRNSGNTNNFSNNMHSSYNNIINGIYNY 1108
>gb|AAM45320.2| similar to Mus musculus (Mouse). Colon RCB-0549 Cle-H3 cDNA, RIKEN
full-length enriched library, clone:G430121L01
product:hypothetical N-terminal nucleophile
aminohydrolases (Ntn hydrolases) structure containing
protein, full insert sequence [Dictyostelium discoideum]
Length = 334
Score = 33.5 bits (75), Expect = 1.8
Identities = 28/123 (22%), Positives = 55/123 (43%), Gaps = 10/123 (8%)
Frame = +3
Query: 45 LRHVRNNIS*NRNGTQNSSTHVKNN---ALKNK*NENEYTFKVI-------VP*YILTLS 194
+++ NNI +N N++ + NN ++ N N N +F + +P ++L +
Sbjct: 46 MKNKNNNIDNKKNSNNNNNNNNNNNNKNSISNNNNNNNKSFGLYSLEQPAPLPLWLLVIV 105
Query: 195 MTLHIKHFIQSFQSFQSITNQVTNPWLVIAVSIIFHLLSNCLSQFSCTMHYISSNVINVI 374
+ I + F +F S++ Q + LLS+ LSQ++ ++I VI
Sbjct: 106 FGVSISVIVFLFLNFPSLSPQHKQLIRLPKNFKDVKLLSDILSQYTDDNYFIVITTFGVI 165
Query: 375 YMY 383
Y +
Sbjct: 166 YTF 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,494,729
Number of Sequences: 1393205
Number of extensions: 8015326
Number of successful extensions: 31954
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29794
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
