Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009025A_C01 KMC009025A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL18925.1|AF429384_1 mevalonate kinase [Hevea brasiliensis] 129 1e-29
ref|NP_198097.1| mevalonate kinase; protein id: At5g27450.1, sup... 127 4e-29
gb|AAD45421.1|L77688_1 mevalonate kinase [Arabidopsis thaliana] 127 5e-29
gb|AAO45760.1| mevalonate kinase-like protein [Cucumis melo] 118 3e-26
gb|AAL31086.1|AC091749_15 putative mevalonate kinase [Oryza sativa] 90 1e-17
>gb|AAL18925.1|AF429384_1 mevalonate kinase [Hevea brasiliensis]
Length = 386
Score = 129 bits (324), Expect = 1e-29
Identities = 69/99 (69%), Positives = 81/99 (81%)
Frame = +1
Query: 157 EVQARAPGKIILSGEHAVVHGSTAVASSISLYTYVSLRFSTPSDNQDLLKLQLKDPALEF 336
EV+ARAPGKIILSGEHAVVHGSTAVA+SI+LYTYV+L F+T ++N D LKLQLKD ALEF
Sbjct: 2 EVKARAPGKIILSGEHAVVHGSTAVAASINLYTYVTLSFAT-AENDDSLKLQLKDLALEF 60
Query: 337 SWPITRIQQVFPESAAVLSSTPASCSVECAKSIAALVEE 453
SWPI RI++ A SST SCS+E K+I+ALVEE
Sbjct: 61 SWPIGRIREALSNLGAPSSSTRTSCSMESIKTISALVEE 99
>ref|NP_198097.1| mevalonate kinase; protein id: At5g27450.1, supported by cDNA:
1045., supported by cDNA: gi_20260531 [Arabidopsis
thaliana] gi|1170660|sp|P46086|KIME_ARATH Mevalonate
kinase (MK) gi|541880|pir||S42088 mevalonate kinase (EC
2.7.1.36) - Arabidopsis thaliana
gi|456614|emb|CAA54820.1| mevalonate kinase [Arabidopsis
thaliana] gi|4883990|gb|AAD31719.1|AF141853_1 mevalonate
kinase [Arabidopsis thaliana] gi|20260532|gb|AAM13164.1|
mevalonate kinase [Arabidopsis thaliana]
gi|21536584|gb|AAM60916.1| mevalonate kinase
[Arabidopsis thaliana] gi|25083757|gb|AAN72115.1|
mevalonate kinase [Arabidopsis thaliana]
Length = 378
Score = 127 bits (320), Expect = 4e-29
Identities = 68/101 (67%), Positives = 81/101 (79%), Gaps = 2/101 (1%)
Frame = +1
Query: 157 EVQARAPGKIILSGEHAVVHGSTAVASSISLYTYVSLRFSTPS-DNQDLLKLQLKDPALE 333
EV+ARAPGKIIL+GEHAVVHGSTAVA++I LYTYV+LRF PS +N D L LQLKD +LE
Sbjct: 2 EVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSAENNDRLTLQLKDISLE 61
Query: 334 FSWPITRIQQVFP-ESAAVLSSTPASCSVECAKSIAALVEE 453
FSW + RI++ P +S+ + STPASCS E KSIA LVEE
Sbjct: 62 FSWSLARIKEAIPYDSSTLCRSTPASCSEETLKSIAVLVEE 102
>gb|AAD45421.1|L77688_1 mevalonate kinase [Arabidopsis thaliana]
Length = 376
Score = 127 bits (319), Expect = 5e-29
Identities = 68/100 (68%), Positives = 81/100 (81%), Gaps = 1/100 (1%)
Frame = +1
Query: 157 EVQARAPGKIILSGEHAVVHGSTAVASSISLYTYVSLRFSTPSDNQDLLKLQLKDPALEF 336
EV+ARAPGKIIL+GEHAVVHGSTAVA++I LYTYV+LRF PS+N D L LQLKD +LEF
Sbjct: 2 EVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSNN-DRLTLQLKDISLEF 60
Query: 337 SWPITRIQQVFP-ESAAVLSSTPASCSVECAKSIAALVEE 453
SW + RI++ P +S+ + STPASCS E KSIA LVEE
Sbjct: 61 SWSLARIKEAIPYDSSTLCRSTPASCSEETLKSIAVLVEE 100
>gb|AAO45760.1| mevalonate kinase-like protein [Cucumis melo]
Length = 141
Score = 118 bits (296), Expect = 3e-26
Identities = 58/99 (58%), Positives = 75/99 (75%)
Frame = +1
Query: 157 EVQARAPGKIILSGEHAVVHGSTAVASSISLYTYVSLRFSTPSDNQDLLKLQLKDPALEF 336
EV+ARAPGKIIL+GEHAVVHGSTAVA+S+ LYT S+R + SD D++KL LKD LEF
Sbjct: 2 EVKARAPGKIILAGEHAVVHGSTAVAASVDLYTTASVRLPSSSDENDIVKLHLKDLELEF 61
Query: 337 SWPITRIQQVFPESAAVLSSTPASCSVECAKSIAALVEE 453
SWP++R+++ +SS P +C EC KSIA+LVE+
Sbjct: 62 SWPVSRVREALGVFVGAISS-PTTCPAECLKSIASLVED 99
>gb|AAL31086.1|AC091749_15 putative mevalonate kinase [Oryza sativa]
Length = 367
Score = 90.1 bits (222), Expect = 1e-17
Identities = 52/103 (50%), Positives = 65/103 (62%), Gaps = 2/103 (1%)
Frame = +1
Query: 151 MEEVQARAPGKIILSGEHAVVHGSTAVASSISLYTYVSLRFSTPSDNQ--DLLKLQLKDP 324
ME ARAPGKIIL+GEHAVVHGS AVA++I LYT SL +D++ L+L LKDP
Sbjct: 1 MEVCAARAPGKIILAGEHAVVHGSAAVAAAIDLYTRCSLCLMPLADDEAAATLELDLKDP 60
Query: 325 ALEFSWPITRIQQVFPESAAVLSSTPASCSVECAKSIAALVEE 453
L FSWP R+++V A + CS + SIA L+EE
Sbjct: 61 GLTFSWPCGRLREVLLTDEAAGAREARPCSPDRLASIARLLEE 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,372,888
Number of Sequences: 1393205
Number of extensions: 8331365
Number of successful extensions: 51441
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 38851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49855
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
