Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009005A_C01 KMC009005A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200876.1| putative protein; protein id: At5g60680.1, supp... 123 2e-27
gb|AAM62875.1| unknown [Arabidopsis thaliana] 118 5e-26
ref|NP_180407.1| hypothetical protein; protein id: At2g28400.1, ... 110 2e-23
ref|NP_195943.1| putative protein; protein id: At5g03230.1, supp... 97 2e-19
pir||D85058 hypothetical protein AT4g04630 [imported] - Arabidop... 96 3e-19
>ref|NP_200876.1| putative protein; protein id: At5g60680.1, supported by cDNA:
16638., supported by cDNA: gi_17380829, supported by
cDNA: gi_20259626 [Arabidopsis thaliana]
gi|9759332|dbj|BAB09841.1|
emb|CAB72159.1~gene_id:MUP24.10~similar to unknown
protein [Arabidopsis thaliana]
gi|17380830|gb|AAL36227.1| unknown protein [Arabidopsis
thaliana] gi|20259627|gb|AAM14170.1| unknown protein
[Arabidopsis thaliana]
Length = 163
Score = 123 bits (308), Expect = 2e-27
Identities = 62/97 (63%), Positives = 73/97 (74%)
Frame = -2
Query: 566 SSSSSSGGGRSGAPSSLPVNVPDWSKILGDEYRQSRRRNNHHHDEDDGDDDDGEEFHGGG 387
SS+ S + A SSLPVNVPDWSKIL EYR +RRR+ +D+DD D++DG G
Sbjct: 63 SSNRPSAASSAAAASSLPVNVPDWSKILRGEYRDNRRRSIEDNDDDDDDNEDG-----GD 117
Query: 386 RVPPHEFLARNRMASLSVHEGIGRTLKGRDLSRVRNA 276
+PPHEFLA+ RMAS SVHEG+GRTLKGRDLSRVRNA
Sbjct: 118 WLPPHEFLAKTRMASFSVHEGVGRTLKGRDLSRVRNA 154
>gb|AAM62875.1| unknown [Arabidopsis thaliana]
Length = 163
Score = 118 bits (296), Expect = 5e-26
Identities = 60/97 (61%), Positives = 71/97 (72%)
Frame = -2
Query: 566 SSSSSSGGGRSGAPSSLPVNVPDWSKILGDEYRQSRRRNNHHHDEDDGDDDDGEEFHGGG 387
SS+ S + A SSLPVNVPDWSK L EYR +RRR+ +D+DD D++DG G
Sbjct: 63 SSNRPSAASSAAAASSLPVNVPDWSKXLRGEYRDNRRRSIEDNDDDDDDNEDG-----GD 117
Query: 386 RVPPHEFLARNRMASLSVHEGIGRTLKGRDLSRVRNA 276
+PPHEFLA+ RMAS SVHEG+GRTLKGRDLSRVR A
Sbjct: 118 WLPPHEFLAKTRMASFSVHEGVGRTLKGRDLSRVRXA 154
>ref|NP_180407.1| hypothetical protein; protein id: At2g28400.1, supported by cDNA:
gi_17979316 [Arabidopsis thaliana]
gi|25350263|pir||D84684 hypothetical protein At2g28400
[imported] - Arabidopsis thaliana
gi|4432837|gb|AAD20686.1| hypothetical protein
[Arabidopsis thaliana] gi|17979317|gb|AAL49884.1|
unknown protein [Arabidopsis thaliana]
gi|21689731|gb|AAM67487.1| unknown protein [Arabidopsis
thaliana]
Length = 162
Score = 110 bits (274), Expect = 2e-23
Identities = 65/103 (63%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Frame = -2
Query: 584 TSRFHGSSSSSSGGGRSG-APSSLPVNVPDWSKILGDEYRQSRRRNNHHHDEDDGDDDDG 408
TS G++ GG SG A SSLPVNVPDWSKILGDE R+ R+ +N +E DGD+
Sbjct: 54 TSGRTGTNRQIHGGSDSGKAASSLPVNVPDWSKILGDESRRQRKISNE--EEVDGDEILC 111
Query: 407 EEFHGGGRVPPHEFLARNRMASLSVHEGIGRTLKGRDLSRVRN 279
E G RVPPHE LA RMAS SVHEG GRTLKGRDLSRVRN
Sbjct: 112 GE--GTRRVPPHELLANRRMASFSVHEGAGRTLKGRDLSRVRN 152
>ref|NP_195943.1| putative protein; protein id: At5g03230.1, supported by cDNA:
gi_13878024 [Arabidopsis thaliana]
gi|11357457|pir||T48344 hypothetical protein F15A17.260
- Arabidopsis thaliana gi|7413600|emb|CAB86090.1|
putative protein [Arabidopsis thaliana]
gi|9757774|dbj|BAB08383.1| gene_id:MOK16.14~unknown
protein [Arabidopsis thaliana]
gi|13878025|gb|AAK44090.1|AF370275_1 unknown protein
[Arabidopsis thaliana] gi|23296536|gb|AAN13121.1|
unknown protein [Arabidopsis thaliana]
Length = 166
Score = 96.7 bits (239), Expect = 2e-19
Identities = 51/98 (52%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = -2
Query: 566 SSSSSSGGGRSGAPSSLPVNVPDWSKILGDEYRQSRRRNNHHHDEDDGDDDDGEEFHGGG 387
+ + SG SLPVN+PDWSKIL EYR ++ D DD D+DD + GG
Sbjct: 63 TKTGDSGNREITKTGSLPVNIPDWSKILKSEYRGHAIPDD---DSDDDDEDDDDSNDGGR 119
Query: 386 R-VPPHEFLARNRMASLSVHEGIGRTLKGRDLSRVRNA 276
R +PPHE+LAR R +S +VHEGIG T KGRDL R+RNA
Sbjct: 120 RMIPPHEYLARRRGSSFTVHEGIGGTAKGRDLRRLRNA 157
>pir||D85058 hypothetical protein AT4g04630 [imported] - Arabidopsis thaliana
gi|4773907|gb|AAD29777.1|AF074021_9 hypothetical protein
[Arabidopsis thaliana] gi|7267221|emb|CAB80828.1|
putative protein [Arabidopsis thaliana]
Length = 202
Score = 96.3 bits (238), Expect = 3e-19
Identities = 62/134 (46%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Frame = -2
Query: 590 IRTSRFHGSSSSSSGGGR-------SGAP-SSLPVNVPDWSKILGDEYRQSRRRNNHHHD 435
I S F SSSSSS SG SS P+NVPDWSK+ GD R + H H
Sbjct: 48 IPKSHFSSSSSSSSSPWNIRRSKEVSGVKQSSAPMNVPDWSKVYGDSKSNRRSSHLHSHA 107
Query: 434 EDDGDDDDGEEFHGGGRVPPHEF----LARNRMASLSVHEGIGRTLKGRDLSRVRNAGLG 267
DD D+DD G VPPHE+ LAR +++S S+ EG+GRTLKGRDLS+VRNA L
Sbjct: 108 ADDDDEDDD-----GCMVPPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLS 162
Query: 266 QNRLPRLDNRFSID 225
+ +D S D
Sbjct: 163 KTGFLEVDKYHSDD 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,745,460
Number of Sequences: 1393205
Number of extensions: 13042296
Number of successful extensions: 104378
Number of sequences better than 10.0: 341
Number of HSP's better than 10.0 without gapping: 69359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93744
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
