Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008999A_C01 KMC008999A_c01
(898 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05875 hypothetical protein T29A15.190 - Arabidopsis thalia... 158 9e-38
gb|AAM62459.1| unknown [Arabidopsis thaliana] 158 9e-38
ref|NP_567785.1| rhodanese-like domain protein; protein id: At4g... 158 9e-38
ref|NP_190501.1| putative protein; protein id: At3g49320.1, supp... 87 3e-16
ref|NP_199012.1| GAMM1 protein-like; protein id: At5g41970.1, su... 84 2e-15
>pir||T05875 hypothetical protein T29A15.190 - Arabidopsis thaliana
gi|4469021|emb|CAB38282.1| hypothetical protein
[Arabidopsis thaliana] gi|7269624|emb|CAB81420.1|
hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 158 bits (400), Expect = 9e-38
Identities = 77/88 (87%), Positives = 81/88 (91%)
Frame = +3
Query: 3 RAAFAFFGIFAGTEENPEFIQSVEAKLNKNAKIIVACSSGGTMKPTQNLPEGQQSRSLIA 182
R FAFFGIF+GTEENPEFIQSVEAKL+K AKIIVACSS GTMKPTQNLPEGQQSRSLIA
Sbjct: 143 RLGFAFFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIA 202
Query: 183 AYLLVLNGYTNVFHLEGGLYSWFKEDLP 266
AYLLVLNGY NVFHLEGG+Y+W KE LP
Sbjct: 203 AYLLVLNGYKNVFHLEGGIYTWGKEGLP 230
>gb|AAM62459.1| unknown [Arabidopsis thaliana]
Length = 224
Score = 158 bits (400), Expect = 9e-38
Identities = 77/88 (87%), Positives = 81/88 (91%)
Frame = +3
Query: 3 RAAFAFFGIFAGTEENPEFIQSVEAKLNKNAKIIVACSSGGTMKPTQNLPEGQQSRSLIA 182
R FAFFGIF+GTEENPEFIQSVEAKL+K AKIIVACSS GTMKPTQNLPEGQQSRSLIA
Sbjct: 130 RLGFAFFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIA 189
Query: 183 AYLLVLNGYTNVFHLEGGLYSWFKEDLP 266
AYLLVLNGY NVFHLEGG+Y+W KE LP
Sbjct: 190 AYLLVLNGYKNVFHLEGGIYTWGKEGLP 217
>ref|NP_567785.1| rhodanese-like domain protein; protein id: At4g27700.1, supported
by cDNA: 14002., supported by cDNA: gi_15215615,
supported by cDNA: gi_20334877 [Arabidopsis thaliana]
gi|15215616|gb|AAK91353.1| AT4g27700/T29A15_190
[Arabidopsis thaliana] gi|20334878|gb|AAM16195.1|
AT4g27700/T29A15_190 [Arabidopsis thaliana]
Length = 224
Score = 158 bits (400), Expect = 9e-38
Identities = 77/88 (87%), Positives = 81/88 (91%)
Frame = +3
Query: 3 RAAFAFFGIFAGTEENPEFIQSVEAKLNKNAKIIVACSSGGTMKPTQNLPEGQQSRSLIA 182
R FAFFGIF+GTEENPEFIQSVEAKL+K AKIIVACSS GTMKPTQNLPEGQQSRSLIA
Sbjct: 130 RLGFAFFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIA 189
Query: 183 AYLLVLNGYTNVFHLEGGLYSWFKEDLP 266
AYLLVLNGY NVFHLEGG+Y+W KE LP
Sbjct: 190 AYLLVLNGYKNVFHLEGGIYTWGKEGLP 217
>ref|NP_190501.1| putative protein; protein id: At3g49320.1, supported by cDNA: 6508.
[Arabidopsis thaliana] gi|11281935|pir||T45837
hypothetical protein F2K15.180 - Arabidopsis thaliana
gi|6723402|emb|CAB66411.1| putative protein [Arabidopsis
thaliana] gi|12324441|gb|AAG52181.1|AC012329_8 unknown
protein; 11418-9170 [Arabidopsis thaliana]
Length = 354
Score = 87.0 bits (214), Expect = 3e-16
Identities = 41/57 (71%), Positives = 46/57 (79%)
Frame = -2
Query: 894 RFESRKPLPYLWRGLENDKLSEIDGIPGCTFVHMNGFIGGNRSYDGALAMARASLKA 724
RFESRK LP WRGLE +KLSE IP C FVHM+GFIG N++Y+GALAMARASL A
Sbjct: 298 RFESRKALPLAWRGLEKEKLSEESSIPRCVFVHMSGFIGANQTYEGALAMARASLMA 354
>ref|NP_199012.1| GAMM1 protein-like; protein id: At5g41970.1, supported by cDNA:
gi_15146291, supported by cDNA: gi_19699165 [Arabidopsis
thaliana] gi|9757942|dbj|BAB08430.1| GAMM1 protein-like
[Arabidopsis thaliana]
Length = 346
Score = 84.3 bits (207), Expect = 2e-15
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = -2
Query: 894 RFESRKPLPYLWRGLENDKLSEIDGIPGCTFVHMNGFIGGNRSYDGALAMARASL 730
RFE+RKPLP WRGL +++LS+ IPGC FVHM+GFIGGN+SYDGAL+MA+ +L
Sbjct: 290 RFENRKPLPEKWRGLRDEELSKAAEIPGCVFVHMSGFIGGNQSYDGALSMAQTAL 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 777,595,347
Number of Sequences: 1393205
Number of extensions: 16769155
Number of successful extensions: 37873
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 36501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37844
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 49054409712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
