Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008997A_C01 KMC008997A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL77143.1|AC097447_9 Unknown protein [Oryza sativa] 89 3e-17
ref|NP_182066.2| expressed protein; protein id: At2g45420.1, sup... 88 6e-17
ref|NP_191933.1| expressed protein; protein id: At4g00220.1, sup... 87 1e-16
pir||C84890 hypothetical protein At2g45420 [imported] - Arabidop... 81 7e-15
ref|NP_702999.1| ORF1629 [Rachiplusia ou multiple nucleopolyhedr... 40 0.014
>gb|AAL77143.1|AC097447_9 Unknown protein [Oryza sativa]
Length = 269
Score = 89.0 bits (219), Expect = 3e-17
Identities = 59/137 (43%), Positives = 76/137 (55%), Gaps = 25/137 (18%)
Frame = -2
Query: 485 QVVSLQGELSYLQGQGATIELHQRPPPSPPQATIAPPLPPPL--------FSIANLPLAP 330
QV LQ EL+YLQG +T+EL PPP T+APP P PL F+ ++LP +
Sbjct: 119 QVAGLQSELNYLQGHLSTMEL-PSPPPYVAGPTLAPPQPQPLMPMTAAANFNFSDLPSSS 177
Query: 329 ASNMQVAYDLSSLFEPM-------GQSSSWHMHHRPVDSHPC----FGSATSSGG----- 198
A+N+ V DLS+LF+P+ G HH+ + HP GS++S GG
Sbjct: 178 AANIPVTADLSTLFDPLPAAQPQWGLYQQQQHHHQQLHHHPYDRMGDGSSSSRGGDDDGS 237
Query: 197 -GGDLQALAHELLHRHG 150
GGDLQALA ELL RHG
Sbjct: 238 DGGDLQALARELLDRHG 254
>ref|NP_182066.2| expressed protein; protein id: At2g45420.1, supported by cDNA:
gi_17227163 [Arabidopsis thaliana]
gi|27805494|sp|O22131|LB18_ARATH LOB domain protein 18
gi|17227164|gb|AAL38036.1|AF447891_1 LOB DOMAIN 18
[Arabidopsis thaliana] gi|20196916|gb|AAB82622.2|
expressed protein [Arabidopsis thaliana]
Length = 262
Score = 87.8 bits (216), Expect = 6e-17
Identities = 65/142 (45%), Positives = 84/142 (58%), Gaps = 14/142 (9%)
Frame = -2
Query: 485 QVVSLQGELSYLQGQGATIELHQ---RPPPSP-PQATIAPPLPPPLFSIANLPLAPASNM 318
QVV+LQ E+SYLQ A++EL Q RP P P PQ P PPPL +I +LP A S +
Sbjct: 123 QVVNLQAEVSYLQAHLASLELPQPQTRPQPMPQPQPLFFTP-PPPL-AITDLP-ASVSPL 179
Query: 317 QVAYDLSSLFEPMGQSSSWHMHHRP-VDSHPCFGSATSS-----GGGG----DLQALAHE 168
YDL+S+F+ SS+W R +D +G ++SS G GG DLQALAHE
Sbjct: 180 PSTYDLASIFDQTTSSSAWATQQRRFIDPRHQYGVSSSSSSVAVGLGGENSHDLQALAHE 239
Query: 167 LLHRHGSAPVACSNASSSYSLS 102
LLHR GS P A ++ S S ++S
Sbjct: 240 LLHRQGSPPPAATDHSPSRTMS 261
>ref|NP_191933.1| expressed protein; protein id: At4g00220.1, supported by cDNA:
gi_16660631 [Arabidopsis thaliana]
gi|27805495|sp|O81323|LB30_ARATH LOB domain protein 30
gi|7486546|pir||T01350 hypothetical protein F6N15.4 -
Arabidopsis thaliana gi|3193318|gb|AAC19300.1| F6N15.4
gene product [Arabidopsis thaliana]
gi|7267109|emb|CAB80780.1| predicted protein of unknown
function [Arabidopsis thaliana]
gi|16660632|gb|AAL27613.1|AF432232_1 LOB DOMAIN 30
[Arabidopsis thaliana]
Length = 228
Score = 86.7 bits (213), Expect = 1e-16
Identities = 59/130 (45%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Frame = -2
Query: 485 QVVSLQGELSYLQGQGATIELHQRPPPSPPQATIAPPLPPPLFSIANLPLAPASNMQVAY 306
QVVSLQ ELSYLQ AT+EL P P PPQ ++ SI +LP S Y
Sbjct: 103 QVVSLQTELSYLQAHLATLEL---PQPQPPQVPVSSSGSLQALSITDLPTISPS----VY 155
Query: 305 DLSSLFEPMGQSSSWHMHHRPVDSHPCFG--SATSSGGGGDLQALAHELLHRHGSAPVAC 132
DLSS+FEP+ SS+W M +P S FG S+++ GGGG+LQALA E +H G P
Sbjct: 156 DLSSIFEPV-MSSTWAMQQQPRPSDHLFGVPSSSNMGGGGELQALAREFIH-GGQMPAQP 213
Query: 131 SNASSSYSLS 102
S +S + S
Sbjct: 214 SPGTSGSASS 223
>pir||C84890 hypothetical protein At2g45420 [imported] - Arabidopsis thaliana
Length = 257
Score = 80.9 bits (198), Expect = 7e-15
Identities = 61/137 (44%), Positives = 79/137 (57%), Gaps = 14/137 (10%)
Frame = -2
Query: 470 QGELSYLQGQGATIELHQ---RPPPSP-PQATIAPPLPPPLFSIANLPLAPASNMQVAYD 303
Q E+SYLQ A++EL Q RP P P PQ P PPPL +I +LP A S + YD
Sbjct: 123 QAEVSYLQAHLASLELPQPQTRPQPMPQPQPLFFTP-PPPL-AITDLP-ASVSPLPSTYD 179
Query: 302 LSSLFEPMGQSSSWHMHHRP-VDSHPCFGSATSS-----GGGG----DLQALAHELLHRH 153
L+S+F+ SS+W R +D +G ++SS G GG DLQALAHELLHR
Sbjct: 180 LASIFDQTTSSSAWATQQRRFIDPRHQYGVSSSSSSVAVGLGGENSHDLQALAHELLHRQ 239
Query: 152 GSAPVACSNASSSYSLS 102
GS P A ++ S S ++S
Sbjct: 240 GSPPPAATDHSPSRTMS 256
>ref|NP_702999.1| ORF1629 [Rachiplusia ou multiple nucleopolyhedrovirus]
gi|2062362|gb|AAB53358.1| vp78 [Anagrapha falcifera
nuclear polyhedrosis virus] gi|3511217|gb|AAC33759.1|
capsid-associated protein [Rachiplusia ou nuclear
polyhedrosis virus] gi|23476480|gb|AAN28027.1| ORF1629
[Rachiplusia ou multiple nucleopolyhedrovirus]
Length = 542
Score = 40.0 bits (92), Expect = 0.014
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 413 PPPSPPQATIAPPLPPPLFSIANLPLAP 330
PPP PP A APP PPP+ +++ PL P
Sbjct: 282 PPPPPPPAPPAPPAPPPMVDLSSAPLPP 309
Score = 31.6 bits (70), Expect = 4.9
Identities = 16/31 (51%), Positives = 19/31 (60%), Gaps = 3/31 (9%)
Frame = -2
Query: 413 PPPSPPQATI---APPLPPPLFSIANLPLAP 330
PPPS P + I PP PPP S++ LP AP
Sbjct: 185 PPPSSPASNIPAPPPPPPPPPPSMSELPPAP 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,845,008
Number of Sequences: 1393205
Number of extensions: 10712992
Number of successful extensions: 117726
Number of sequences better than 10.0: 528
Number of HSP's better than 10.0 without gapping: 59228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100784
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
