Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008981A_C01 KMC008981A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199013.1| putative protein; protein id: At5g41980.1 [Arab... 67 2e-10
gb|AAF79346.1|AC007887_5 F15O4.10 [Arabidopsis thaliana] 39 0.036
gb|AAN65002.1| Hypothetical protein [Oryza sativa (japonica cult... 39 0.048
ref|NP_192560.1| putative protein; protein id: At4g08200.1 [Arab... 36 0.31
dbj|BAC07409.1| hypothetical protein~similar to Oryza sativa chr... 35 0.53
>ref|NP_199013.1| putative protein; protein id: At5g41980.1 [Arabidopsis thaliana]
gi|9757943|dbj|BAB08431.1|
emb|CAB72466.1~gene_id:MJC20.8~similar to unknown
protein [Arabidopsis thaliana]
gi|28416671|gb|AAO42866.1| At5g41980 [Arabidopsis
thaliana]
Length = 374
Score = 66.6 bits (161), Expect = 2e-10
Identities = 37/95 (38%), Positives = 56/95 (58%)
Frame = -1
Query: 523 LQTQVKLVVAACALHNFIRRENPDDRLFKMYGEDASFTMEESLPPLEAELRPNTDVEAQC 344
LQTQVKLV+AACALHN++R E PDD +F+M+ E+ T+ E+ E L + + +
Sbjct: 284 LQTQVKLVIAACALHNYVRLEKPDDLVFRMFEEE---TLAEAGEDREVALE---EEQVEI 337
Query: 343 QSLDLTFDAEEIALASESRDFIATGLWNDFIHGFA 239
+ F EE+ + RD IA+ LWN ++ +
Sbjct: 338 VGQEHGFRPEEVEDSLRLRDEIASELWNHYVQNMS 372
>gb|AAF79346.1|AC007887_5 F15O4.10 [Arabidopsis thaliana]
Length = 92
Score = 38.9 bits (89), Expect = 0.036
Identities = 28/84 (33%), Positives = 38/84 (44%)
Frame = -1
Query: 508 KLVVAACALHNFIRRENPDDRLFKMYGEDASFTMEESLPPLEAELRPNTDVEAQCQSLDL 329
KLVVA ALHNF+R+ N D F+ E E +P+ + E + Q D
Sbjct: 21 KLVVATMALHNFVRKSNIPDPDFEANCEQ------------EGNHQPSLNEEVEVQEDDQ 68
Query: 328 TFDAEEIALASESRDFIATGLWND 257
D+ + RD IA LWN+
Sbjct: 69 MIDSRQ--YMEGIRDDIAMNLWNN 90
>gb|AAN65002.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 807
Score = 38.5 bits (88), Expect = 0.048
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 1/76 (1%)
Frame = -1
Query: 514 QVKLVVAACALHNFIRRENPDDRLFKMYGEDASFTMEESLPPLEAELRPNT-DVEAQCQS 338
Q +++VA CALHNFIR+ D+ F D E +PP ++ +P T +V C
Sbjct: 737 QAQIIVACCALHNFIRKSGIRDKHF-----DRCDCDENYVPPQASDDQPETEEVFDDCDL 791
Query: 337 LDLTFDAEEIALASES 290
++ D+ +AL S
Sbjct: 792 MNAFRDSIALALVHGS 807
>ref|NP_192560.1| putative protein; protein id: At4g08200.1 [Arabidopsis thaliana]
gi|7486873|pir||T10547 hypothetical protein T12G13.40 -
Arabidopsis thaliana gi|5262193|emb|CAB45790.1| putative
protein [Arabidopsis thaliana]
gi|7267460|emb|CAB81156.1| putative protein [Arabidopsis
thaliana]
Length = 202
Score = 35.8 bits (81), Expect = 0.31
Identities = 29/89 (32%), Positives = 43/89 (47%)
Frame = -1
Query: 523 LQTQVKLVVAACALHNFIRRENPDDRLFKMYGEDASFTMEESLPPLEAELRPNTDVEAQC 344
++T KLVV ALHNF+R+ N D F +A++ +++ P L+ +V+
Sbjct: 126 VRTTKKLVVETMALHNFVRKSNILDPDF-----EANWEQDDNHQP---SLKEEVEVQDDG 177
Query: 343 QSLDLTFDAEEIALASESRDFIATGLWND 257
Q D E I RD IA LWN+
Sbjct: 178 QIFDSRQYMEGI------RDDIAMNLWNN 200
>dbj|BAC07409.1| hypothetical protein~similar to Oryza sativa chromosome10,
OSJNBa0079H13.17 [Oryza sativa (japonica
cultivar-group)]
Length = 764
Score = 35.0 bits (79), Expect = 0.53
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = -1
Query: 514 QVKLVVAACALHNFIRRENPDDRLFKMYGEDASFTMEESLPPLEAELRPNTDVEAQCQSL 335
Q +++ A ALHNFIR D F Y +D E+ PL P+++ S
Sbjct: 692 QSRIIHACIALHNFIRDSQMADAEFDNYDQD------ENYDPLGGTSSPSSEPTNDLDS- 744
Query: 334 DLTFDAEEIALASESRDFIATGLWN 260
+ ++ RD++A GLW+
Sbjct: 745 ---------HVMNQFRDWVADGLWS 760
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,278,602
Number of Sequences: 1393205
Number of extensions: 9079649
Number of successful extensions: 23285
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 22010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23153
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
