Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008973A_C01 KMC008973A_c01
(804 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33327.1| KIAA1657 protein [Homo sapiens] 40 0.040
ref|XP_283692.1| hypothetical protein XP_283692 [Mus musculus] g... 36 0.75
ref|NP_701651.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.3
ref|NP_757930.1| hypothetical protein [Mycoplasma penetrans] gi|... 33 3.7
gb|AAL91502.1|AF482395_1 ABC transporter AbcG17 [Dictyostelium d... 33 6.4
>dbj|BAB33327.1| KIAA1657 protein [Homo sapiens]
Length = 127
Score = 40.0 bits (92), Expect = 0.040
Identities = 39/117 (33%), Positives = 55/117 (46%)
Frame = -3
Query: 682 SQMVVFKFSLNGSF*VALILCLFFSLCFSLDMLYLVFLTFFRKFIHQNPSFYLVLSLRLP 503
+Q+ +F+ +L SF ++L L L F L F L FL+FF + +PSF L L LP
Sbjct: 1 AQLPMFQTNLFLSFFLSLFLSLSFFLPFFLSFFLSFFLSFFLS-LSLSPSFLPSLPLSLP 59
Query: 502 P*ASHIEFLFIFLLCLFLLK**YVISIFSLPFVQHQRNLSVGEDFHCQSTNVKTQHL 332
P FL FL F L +S F L F+ +LS+ T+ T+ L
Sbjct: 60 P----SFFLSFFLSFFFFLSFLCFLSFF-LSFLSFSFSLSLSLSLSHTHTHTHTRVL 111
>ref|XP_283692.1| hypothetical protein XP_283692 [Mus musculus]
gi|26331786|dbj|BAC29623.1| unnamed protein product [Mus
musculus]
Length = 122
Score = 35.8 bits (81), Expect = 0.75
Identities = 29/85 (34%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
Frame = -3
Query: 619 LFFS-LCFSLDMLYLVFLTFFRKFIHQNPSFYLVLSLRLPP*ASHIEFLFIFLLCLFLLK 443
LFFS L FS L FL+FF F+ + F+ S + FLF FLL +F +
Sbjct: 18 LFFSFLFFSFPFLSFPFLSFFFSFLFFSFLFF-----------SSLFFLFFFLLDIFFI- 65
Query: 442 **YVISIFSLPFVQHQRNLSVGEDF 368
Y+ +IF P + +LS F
Sbjct: 66 --YISNIFFFPDLPFGNSLSYAPSF 88
>ref|NP_701651.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496821|gb|AAN36375.1|AE014848_51 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2013
Score = 35.0 bits (79), Expect = 1.3
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = -3
Query: 769 FYYCKMFFQLILIF*LFTNLYK-HIPVLCRSQMVVFKFSLNGSF*VALILCLFFSLCFS- 596
FYY FF L + F LF L K H PVL S+++ + + L LF S C
Sbjct: 228 FYYDDEFFFLQISFYLFKILIKYHDPVL--SEILENNKMTPEIYASSWFLTLFASKCNMR 285
Query: 595 -LDMLYLVFLTFFRKFIHQNPSFYLVLSLRL 506
L+++Y++FL + +NP FY SL L
Sbjct: 286 ILNLIYMIFL------LEKNPFFYFYFSLAL 310
>ref|NP_757930.1| hypothetical protein [Mycoplasma penetrans]
gi|26454004|dbj|BAC44334.1| hypothetical protein
[Mycoplasma penetrans]
Length = 65
Score = 33.5 bits (75), Expect = 3.7
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 9/51 (17%)
Frame = -3
Query: 589 MLYLVFLTFFRKFIHQNPSFYLVLS---------LRLPP*ASHIEFLFIFL 464
+L++VF+ FR IH+N SFYL++S L++P +I+ +FIFL
Sbjct: 18 VLWVVFVVCFRFIIHENKSFYLLMSIISNDFQDNLKIP---WNIQQVFIFL 65
>gb|AAL91502.1|AF482395_1 ABC transporter AbcG17 [Dictyostelium discoideum]
Length = 1476
Score = 32.7 bits (73), Expect = 6.4
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Frame = -3
Query: 616 FFSLCFSLDMLYLVFLTFFRKFIHQNPSFYLVLSLRLPP*ASHIEFLFIFLLCLF----- 452
FF CF+L + L + FR F + PS + +L + F+FIF + F
Sbjct: 623 FFIFCFTLVGVSLSSASLFRGFANFTPSLFTAQNL--------MNFVFIFEVNYFGYSQT 674
Query: 451 ------LLK**YVISIFSLPFVQHQRNLSVGEDFHCQSTNVKTQHLNN 326
K Y I+ + F N G DF C + + H NN
Sbjct: 675 PDKMHSWFKWTYYINPLAYAFKSLMINEFKGLDFSCLDSAIPFDHFNN 722
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,934,293
Number of Sequences: 1393205
Number of extensions: 13931969
Number of successful extensions: 29360
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29279
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
