Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008940A_C01 KMC008940A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA18183.1| hypothetical protein [Plasmodium yoelii yoelii] 44 0.002
ref|NP_196675.1| putative protein; protein id: At5g11140.1 [Arab... 42 0.005
pir||C84595 similar to pEARLI 4 protein [imported] - Arabidopsis... 42 0.005
ref|NP_179690.2| unknown protein; protein id: At2g20950.1, suppo... 42 0.005
ref|NP_603419.1| Exonuclease SBCC [Fusobacterium nucleatum subsp... 41 0.008
>gb|EAA18183.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1154
Score = 43.5 bits (101), Expect = 0.002
Identities = 16/57 (28%), Positives = 38/57 (66%)
Frame = -3
Query: 518 MEKLRKELESENEILVQEEKEVSDIKTKTEDIKEHLSELEVKASDLDKNLLSIKSQV 348
++K RKE+ EN+++ + E+++ D K E+ ++ + EL++ S+ KNL +++++
Sbjct: 802 LDKKRKEIADENDVIEKRERDIIDAKNMIEEKEKEIKELDILLSEKKKNLEDLENEI 858
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/75 (26%), Positives = 39/75 (51%), Gaps = 11/75 (14%)
Frame = -3
Query: 521 EMEKLRKELESENEILVQEEKEV-----------SDIKTKTEDIKEHLSELEVKASDLDK 375
++E +KE+ES NE + + +KE+ +I++ E+I E+E K +++K
Sbjct: 731 QIEMKKKEIESSNEEINRSKKEIESSNEEINRSKKEIESSNEEINRAKKEIESKNEEINK 790
Query: 374 NLLSIKSQVQNLDSK 330
I+ ++ LD K
Sbjct: 791 AKEKIEVELCALDKK 805
>ref|NP_196675.1| putative protein; protein id: At5g11140.1 [Arabidopsis thaliana]
gi|8953376|emb|CAB96649.1| putative protein [Arabidopsis
thaliana]
Length = 241
Score = 42.0 bits (97), Expect = 0.005
Identities = 20/66 (30%), Positives = 39/66 (58%)
Frame = -3
Query: 506 RKELESENEILVQEEKEVSDIKTKTEDIKEHLSELEVKASDLDKNLLSIKSQVQNLDSKS 327
++E+E + L ++EKE+ + + K L LE+K + LDK L+ ++S+V+ +S
Sbjct: 176 KQEMELSLKKLAEKEKEMKEFREKLMKTTGKLGSLEMKRTCLDKRLVFLRSKVEKFQGQS 235
Query: 326 LLDDLL 309
+ D+L
Sbjct: 236 VFQDIL 241
>pir||C84595 similar to pEARLI 4 protein [imported] - Arabidopsis thaliana
Length = 503
Score = 42.0 bits (97), Expect = 0.005
Identities = 24/71 (33%), Positives = 38/71 (52%)
Frame = -3
Query: 527 DLEMEKLRKELESENEILVQEEKEVSDIKTKTEDIKEHLSELEVKASDLDKNLLSIKSQV 348
D EM +KE+E E L + EKE + + + ++ L +LE+K + KNL +S+V
Sbjct: 433 DREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKV 492
Query: 347 QNLDSKSLLDD 315
D S+L D
Sbjct: 493 LKFDGHSVLVD 503
>ref|NP_179690.2| unknown protein; protein id: At2g20950.1, supported by cDNA:
gi_19347833 [Arabidopsis thaliana]
gi|19347834|gb|AAL86329.1| unknown protein [Arabidopsis
thaliana]
Length = 384
Score = 42.0 bits (97), Expect = 0.005
Identities = 24/71 (33%), Positives = 38/71 (52%)
Frame = -3
Query: 527 DLEMEKLRKELESENEILVQEEKEVSDIKTKTEDIKEHLSELEVKASDLDKNLLSIKSQV 348
D EM +KE+E E L + EKE + + + ++ L +LE+K + KNL +S+V
Sbjct: 314 DREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKV 373
Query: 347 QNLDSKSLLDD 315
D S+L D
Sbjct: 374 LKFDGHSVLVD 384
>ref|NP_603419.1| Exonuclease SBCC [Fusobacterium nucleatum subsp. nucleatum ATCC
25586] gi|19714015|gb|AAL94718.1| Exonuclease SBCC
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 921
Score = 41.2 bits (95), Expect = 0.008
Identities = 24/83 (28%), Positives = 48/83 (56%), Gaps = 9/83 (10%)
Frame = -3
Query: 533 NYDLEMEKLRKELESENEILVQEEKEVSDIKT-------KTEDIKEHLSELEVKASDLDK 375
N D++++KL + E +N +++E+K +++ K E++K L LE++ + K
Sbjct: 557 NLDIDIQKLIENQEFQNSQMLREKKTELEVELRNLNLDEKRENLKNILENLEIEKEKILK 616
Query: 374 NLLSIKSQVQNLD--SKSLLDDL 312
N SIKS ++ +D SK + +D+
Sbjct: 617 NQNSIKSNLEEIDVFSKKIKEDI 639
Score = 36.6 bits (83), Expect = 0.20
Identities = 26/78 (33%), Positives = 43/78 (54%), Gaps = 6/78 (7%)
Frame = -3
Query: 527 DLEMEKLRKELESEN--EILVQEEKEVSDIKTKTEDIKEHLSELEVKAS----DLDKNLL 366
++E+ L + + EN IL E E I IK +L E++V + D++KN+
Sbjct: 585 EVELRNLNLDEKRENLKNILENLEIEKEKILKNQNSIKSNLEEIDVFSKKIKEDINKNIE 644
Query: 365 SIKSQVQNLDSKSLLDDL 312
SIKS+++ ++K LDDL
Sbjct: 645 SIKSEIKTFENK--LDDL 660
Score = 34.7 bits (78), Expect = 0.75
Identities = 17/62 (27%), Positives = 38/62 (60%)
Frame = -3
Query: 521 EMEKLRKELESENEILVQEEKEVSDIKTKTEDIKEHLSELEVKASDLDKNLLSIKSQVQN 342
++E L+K ++ + +ILV E+ D K + ++++ + +LE+ + + NL I+ ++N
Sbjct: 499 DLENLKKNIKEKTQILV-EKVVFEDKKKQYFELEKSIKDLEISLKNEEINLKEIELDIKN 557
Query: 341 LD 336
LD
Sbjct: 558 LD 559
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,130,439
Number of Sequences: 1393205
Number of extensions: 8904816
Number of successful extensions: 46224
Number of sequences better than 10.0: 560
Number of HSP's better than 10.0 without gapping: 40641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45670
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
