Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008937A_C01 KMC008937A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67052.1| unknown protein [Arabidopsis thaliana] 95 7e-19
ref|NP_175567.1| unknown protein; protein id: At1g51560.1, suppo... 95 7e-19
dbj|BAB01457.1| gb|AAF00629.1~gene_id:MSA6.18~similar to unknown... 90 2e-17
ref|NP_188751.1| unknown protein; protein id: At3g21140.1, suppo... 90 2e-17
dbj|BAC57318.1| P0700D12.12 [Oryza sativa (japonica cultivar-gro... 82 5e-15
>gb|AAL67052.1| unknown protein [Arabidopsis thaliana]
Length = 392
Score = 94.7 bits (234), Expect = 7e-19
Identities = 45/67 (67%), Positives = 59/67 (87%)
Frame = -3
Query: 572 KLLSNETEIDDAALISIDSKGTDIRVRQGAQFHIQRISFDEGQNLDTLEEAKAALQKLIH 393
+LLS+E E+DDAA+ISIDSKG DIRVRQGAQF IQR++F+E ++TLEEAK+AL K+I
Sbjct: 324 ELLSSEAELDDAAIISIDSKGIDIRVRQGAQFKIQRLAFEESHGVETLEEAKSALWKVIE 383
Query: 392 RGKVHDL 372
+GK+H+L
Sbjct: 384 KGKLHNL 390
>ref|NP_175567.1| unknown protein; protein id: At1g51560.1, supported by cDNA:
gi_18377804 [Arabidopsis thaliana]
gi|25405481|pir||B96554 unknown protein, 18888-20847
[imported] - Arabidopsis thaliana
gi|12325371|gb|AAG52630.1|AC024261_17 unknown protein;
18888-20847 [Arabidopsis thaliana]
gi|23297513|gb|AAN12985.1| unknown protein [Arabidopsis
thaliana]
Length = 392
Score = 94.7 bits (234), Expect = 7e-19
Identities = 45/67 (67%), Positives = 59/67 (87%)
Frame = -3
Query: 572 KLLSNETEIDDAALISIDSKGTDIRVRQGAQFHIQRISFDEGQNLDTLEEAKAALQKLIH 393
+LLS+E E+DDAA+ISIDSKG DIRVRQGAQF IQR++F+E ++TLEEAK+AL K+I
Sbjct: 324 ELLSSEAELDDAAIISIDSKGIDIRVRQGAQFKIQRLAFEESHGVETLEEAKSALWKVIE 383
Query: 392 RGKVHDL 372
+GK+H+L
Sbjct: 384 KGKLHNL 390
>dbj|BAB01457.1| gb|AAF00629.1~gene_id:MSA6.18~similar to unknown protein
[Arabidopsis thaliana]
Length = 395
Score = 89.7 bits (221), Expect = 2e-17
Identities = 42/65 (64%), Positives = 58/65 (88%)
Frame = -3
Query: 572 KLLSNETEIDDAALISIDSKGTDIRVRQGAQFHIQRISFDEGQNLDTLEEAKAALQKLIH 393
+LLS E+E+DDAALISIDSKG D+RVRQGAQF+IQR++F+EG ++TLEEAK+AL K++
Sbjct: 328 ELLSTESEVDDAALISIDSKGIDVRVRQGAQFNIQRLAFEEGHGVETLEEAKSALWKVLE 387
Query: 392 RGKVH 378
+ K++
Sbjct: 388 KVKLN 392
>ref|NP_188751.1| unknown protein; protein id: At3g21140.1, supported by cDNA:
gi_20466160 [Arabidopsis thaliana]
gi|20466161|gb|AAM20398.1| unknown protein [Arabidopsis
thaliana] gi|25083912|gb|AAN72133.1| unknown protein
[Arabidopsis thaliana]
Length = 387
Score = 89.7 bits (221), Expect = 2e-17
Identities = 42/65 (64%), Positives = 58/65 (88%)
Frame = -3
Query: 572 KLLSNETEIDDAALISIDSKGTDIRVRQGAQFHIQRISFDEGQNLDTLEEAKAALQKLIH 393
+LLS E+E+DDAALISIDSKG D+RVRQGAQF+IQR++F+EG ++TLEEAK+AL K++
Sbjct: 320 ELLSTESEVDDAALISIDSKGIDVRVRQGAQFNIQRLAFEEGHGVETLEEAKSALWKVLE 379
Query: 392 RGKVH 378
+ K++
Sbjct: 380 KVKLN 384
>dbj|BAC57318.1| P0700D12.12 [Oryza sativa (japonica cultivar-group)]
Length = 320
Score = 82.0 bits (201), Expect = 5e-15
Identities = 40/59 (67%), Positives = 50/59 (83%)
Frame = -3
Query: 572 KLLSNETEIDDAALISIDSKGTDIRVRQGAQFHIQRISFDEGQNLDTLEEAKAALQKLI 396
+ LS+E E+DDAALIS+DSKG DIRVRQGAQF+IQR++FD ++TLEEAK AL K+I
Sbjct: 257 EFLSSEGEVDDAALISVDSKGIDIRVRQGAQFNIQRLAFDVPHKVETLEEAKRALHKII 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,420,066
Number of Sequences: 1393205
Number of extensions: 8231242
Number of successful extensions: 18191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18191
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
