Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008932A_C01 KMC008932A_c01
(455 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704154.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.0
gb|AAH46900.1| Similar to TRAM-like protein [Danio rerio] 32 3.0
dbj|BAA78527.1| serine repeat antigen [Plasmodium falciparum] 32 4.0
gb|AAK93060.1| GH28569p [Drosophila melanogaster] 31 5.2
ref|NP_609164.2| CG7093-PA [Drosophila melanogaster] gi|22945917... 31 5.2
>ref|NP_704154.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498892|emb|CAD50970.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1221
Score = 32.0 bits (71), Expect = 3.0
Identities = 15/26 (57%), Positives = 19/26 (72%)
Frame = -1
Query: 86 LNLITLIRYVFLFNNYLNFIKKKKKK 9
+N I I+ +F N YLNF+KKKKKK
Sbjct: 194 MNFIVHIK-IFKLNGYLNFLKKKKKK 218
>gb|AAH46900.1| Similar to TRAM-like protein [Danio rerio]
Length = 371
Score = 32.0 bits (71), Expect = 3.0
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Frame = -3
Query: 279 VLVAVYELVLLPFLKKLSREIKLPFSLTTYARGQGQ---FY----VWTSFALKLEG---- 133
+ + ++ +V L K++R + L S T GQ FY VW+ + + EG
Sbjct: 84 ITIILHAVVQEYVLDKVNRRLHLSKSKNTKFNESGQLCVFYLVSSVWSLYVITTEGHLLH 143
Query: 132 ----WDNYKVKNY*DLNLCLEPYYLNTLCFFVQ*LLEFYKKKKKK 10
W+NY + L ++ +YL L +++ L E Y +K +K
Sbjct: 144 PSSLWENYP---HVHLRFQVKFFYLTQLAYWIHALPELYFQKVRK 185
>dbj|BAA78527.1| serine repeat antigen [Plasmodium falciparum]
Length = 249
Score = 31.6 bits (70), Expect = 4.0
Identities = 33/92 (35%), Positives = 40/92 (42%), Gaps = 6/92 (6%)
Frame = +2
Query: 197 VKENGSLISLESFFRNGSKTNSYTATKTDDP*LPCLSI*AE*GCSYGT------SVSGSC 358
+KE + IS ES NS + K LP E G S GT +SGS
Sbjct: 137 LKETNNAISFES--------NSGSLEKKKYVKLPSNGTTGEQGSSTGTVRGDTEPISGSS 188
Query: 359 SDVSLSESRTSPSGLSPEIRSRLSASSSNSFS 454
S S S S +S S S S S+SSS+S S
Sbjct: 189 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 220
>gb|AAK93060.1| GH28569p [Drosophila melanogaster]
Length = 322
Score = 31.2 bits (69), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -3
Query: 402 SPDGDVLDSDSDTSEQDPDTEVPYEQPHSA 313
S D ++ + D D E+D D EV E PHS+
Sbjct: 135 SSDDEMEEDDEDEDEEDEDEEVQVEAPHSS 164
>ref|NP_609164.2| CG7093-PA [Drosophila melanogaster] gi|22945917|gb|AAF52579.2|
CG7093-PA [Drosophila melanogaster]
Length = 887
Score = 31.2 bits (69), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -3
Query: 402 SPDGDVLDSDSDTSEQDPDTEVPYEQPHSA 313
S D ++ + D D E+D D EV E PHS+
Sbjct: 700 SSDDEMEEDDEDEDEEDEDEEVQVEAPHSS 729
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,340,549
Number of Sequences: 1393205
Number of extensions: 8101281
Number of successful extensions: 26970
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 25289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26825
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
