Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008921A_C01 KMC008921A_c01
(413 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis ... 70 6e-12
ref|NP_565200.1| expressed protein; protein id: At1g79110.1, sup... 70 6e-12
pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thali... 70 6e-12
gb|AAM67026.1| unknown [Arabidopsis thaliana] 66 1e-10
ref|NP_566438.1| expressed protein; protein id: At3g12920.1, sup... 66 1e-10
>gb|AAM65075.1| inhibitor of apoptosis-like protein [Arabidopsis thaliana]
Length = 358
Score = 70.1 bits (170), Expect = 6e-12
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -2
Query: 178 RKCGKEESCVLILPCRHLCVCTLCGSTLHNCPICKS 71
R CG+EESCVL+LPCRHLC+C +CGS++H CPIC S
Sbjct: 311 RNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPICTS 346
Score = 29.6 bits (65), Expect = 9.2
Identities = 36/135 (26%), Positives = 50/135 (36%), Gaps = 11/135 (8%)
Frame = -3
Query: 408 LRANLEHALCQIRDSDDEDATVVPARPLAGARRTDAGITVCGSNHTMMMGGAPVVQPGGA 229
LR NLEH L Q++D A D + CGS+ GG
Sbjct: 242 LRTNLEHVLAQVKDVSR------GAGLEKNMNEEDDAESCCGSS------------CGGG 283
Query: 228 G*GVWWARE**EEEIVHGSVGKRNRACLSCLADTSVFVLFV-----------GLPYTIVL 82
G R E E + +R R C +C + S +L +T +
Sbjct: 284 GEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPI 343
Query: 81 SVNPTQNASVHVNMT 37
+P +NASVHVNM+
Sbjct: 344 CTSP-KNASVHVNMS 357
>ref|NP_565200.1| expressed protein; protein id: At1g79110.1, supported by cDNA:
36412. [Arabidopsis thaliana]
Length = 358
Score = 70.1 bits (170), Expect = 6e-12
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -2
Query: 178 RKCGKEESCVLILPCRHLCVCTLCGSTLHNCPICKS 71
R CG+EESCVL+LPCRHLC+C +CGS++H CPIC S
Sbjct: 311 RNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPICTS 346
Score = 29.6 bits (65), Expect = 9.2
Identities = 36/135 (26%), Positives = 50/135 (36%), Gaps = 11/135 (8%)
Frame = -3
Query: 408 LRANLEHALCQIRDSDDEDATVVPARPLAGARRTDAGITVCGSNHTMMMGGAPVVQPGGA 229
LR NLEH L Q++D A D + CGS+ GG
Sbjct: 242 LRTNLEHVLAQVKDVSR------GAGLEKNMNEEDDAESCCGSS------------CGGG 283
Query: 228 G*GVWWARE**EEEIVHGSVGKRNRACLSCLADTSVFVLFV-----------GLPYTIVL 82
G R E E + +R R C +C + S +L +T +
Sbjct: 284 GEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPI 343
Query: 81 SVNPTQNASVHVNMT 37
+P +NASVHVNM+
Sbjct: 344 CTSP-KNASVHVNMS 357
>pir||T01044 hypothetical protein YUP8H12R.27 - Arabidopsis thaliana
gi|3152583|gb|AAC17064.1| Contains similarity to
inhibitor of apoptosis protein gb|U45881 from D.
melanogaster. [Arabidopsis thaliana]
Length = 347
Score = 70.1 bits (170), Expect = 6e-12
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -2
Query: 178 RKCGKEESCVLILPCRHLCVCTLCGSTLHNCPICKS 71
R CG+EESCVL+LPCRHLC+C +CGS++H CPIC S
Sbjct: 300 RNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPICTS 335
Score = 29.6 bits (65), Expect = 9.2
Identities = 36/135 (26%), Positives = 50/135 (36%), Gaps = 11/135 (8%)
Frame = -3
Query: 408 LRANLEHALCQIRDSDDEDATVVPARPLAGARRTDAGITVCGSNHTMMMGGAPVVQPGGA 229
LR NLEH L Q++D A D + CGS+ GG
Sbjct: 231 LRTNLEHVLAQVKDVSR------GAGLEKNMNEEDDAESCCGSS------------CGGG 272
Query: 228 G*GVWWARE**EEEIVHGSVGKRNRACLSCLADTSVFVLFV-----------GLPYTIVL 82
G R E E + +R R C +C + S +L +T +
Sbjct: 273 GEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPI 332
Query: 81 SVNPTQNASVHVNMT 37
+P +NASVHVNM+
Sbjct: 333 CTSP-KNASVHVNMS 346
>gb|AAM67026.1| unknown [Arabidopsis thaliana]
Length = 335
Score = 65.9 bits (159), Expect = 1e-10
Identities = 25/41 (60%), Positives = 33/41 (79%)
Frame = -2
Query: 193 GGDCARKCGKEESCVLILPCRHLCVCTLCGSTLHNCPICKS 71
G R CGK E+ VL+LPCRH+C+C++CGS+L+ CPICKS
Sbjct: 283 GMSMCRSCGKGEASVLLLPCRHMCLCSVCGSSLNTCPICKS 323
>ref|NP_566438.1| expressed protein; protein id: At3g12920.1, supported by cDNA: 924.
[Arabidopsis thaliana] gi|15795121|dbj|BAB02499.1|
gene_id:MGH6.3~unknown protein [Arabidopsis thaliana]
gi|26451940|dbj|BAC43062.1| unknown protein [Arabidopsis
thaliana]
Length = 335
Score = 65.9 bits (159), Expect = 1e-10
Identities = 25/41 (60%), Positives = 33/41 (79%)
Frame = -2
Query: 193 GGDCARKCGKEESCVLILPCRHLCVCTLCGSTLHNCPICKS 71
G R CGK E+ VL+LPCRH+C+C++CGS+L+ CPICKS
Sbjct: 283 GMSMCRSCGKGEASVLLLPCRHMCLCSVCGSSLNTCPICKS 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,802,297
Number of Sequences: 1393205
Number of extensions: 11353214
Number of successful extensions: 41519
Number of sequences better than 10.0: 439
Number of HSP's better than 10.0 without gapping: 37546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41336
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
