Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008917A_C01 KMC008917A_c01
(809 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566791.1| expressed protein; protein id: At3g26370.1, sup... 256 2e-67
gb|AAM67369.1| unknown [Arabidopsis thaliana] 256 2e-67
dbj|BAB02197.1| contains similarity to the auxin-independent gro... 256 2e-67
pir||C86476 protein F15O4.45 [imported] - Arabidopsis thaliana g... 100 4e-20
gb|AAK93632.1| putative growth regulator protein [Arabidopsis th... 100 4e-20
>ref|NP_566791.1| expressed protein; protein id: At3g26370.1, supported by cDNA:
36984. [Arabidopsis thaliana]
Length = 283
Score = 256 bits (655), Expect = 2e-67
Identities = 123/131 (93%), Positives = 126/131 (95%)
Frame = -3
Query: 807 RMAPLRNMFPNLVTKEELATKDELDGFRKHVTSLAALDFLVCLKSDVFVMTPGGNFAKLI 628
RMAPLRNMFPNLVTKE+LA K+EL FRKHVTSLAALDFLVCLKSDVFVMT GGNFAKLI
Sbjct: 153 RMAPLRNMFPNLVTKEDLAGKEELTTFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLI 212
Query: 627 IGARRYMGHRLKSIKPDQGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW 448
IGARRYMGHR KSIKPD+GLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW
Sbjct: 213 IGARRYMGHRQKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW 272
Query: 447 ENPLTPCMCKA 415
ENPLTPCMCKA
Sbjct: 273 ENPLTPCMCKA 283
>gb|AAM67369.1| unknown [Arabidopsis thaliana]
Length = 342
Score = 256 bits (655), Expect = 2e-67
Identities = 123/131 (93%), Positives = 126/131 (95%)
Frame = -3
Query: 807 RMAPLRNMFPNLVTKEELATKDELDGFRKHVTSLAALDFLVCLKSDVFVMTPGGNFAKLI 628
RMAPLRNMFPNLVTKE+LA K+EL FRKHVTSLAALDFLVCLKSDVFVMT GGNFAKLI
Sbjct: 212 RMAPLRNMFPNLVTKEDLAGKEELTTFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLI 271
Query: 627 IGARRYMGHRLKSIKPDQGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW 448
IGARRYMGHR KSIKPD+GLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW
Sbjct: 272 IGARRYMGHRQKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW 331
Query: 447 ENPLTPCMCKA 415
ENPLTPCMCKA
Sbjct: 332 ENPLTPCMCKA 342
>dbj|BAB02197.1| contains similarity to the auxin-independent growth
promoter~gene_id:F20C19.9 [Arabidopsis thaliana]
Length = 557
Score = 256 bits (655), Expect = 2e-67
Identities = 123/131 (93%), Positives = 126/131 (95%)
Frame = -3
Query: 807 RMAPLRNMFPNLVTKEELATKDELDGFRKHVTSLAALDFLVCLKSDVFVMTPGGNFAKLI 628
RMAPLRNMFPNLVTKE+LA K+EL FRKHVTSLAALDFLVCLKSDVFVMT GGNFAKLI
Sbjct: 427 RMAPLRNMFPNLVTKEDLAGKEELTTFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLI 486
Query: 627 IGARRYMGHRLKSIKPDQGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW 448
IGARRYMGHR KSIKPD+GLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW
Sbjct: 487 IGARRYMGHRQKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLW 546
Query: 447 ENPLTPCMCKA 415
ENPLTPCMCKA
Sbjct: 547 ENPLTPCMCKA 557
>pir||C86476 protein F15O4.45 [imported] - Arabidopsis thaliana
gi|8778357|gb|AAF79365.1|AC007887_24 F15O4.45
[Arabidopsis thaliana]
Length = 668
Score = 99.8 bits (247), Expect = 4e-20
Identities = 59/133 (44%), Positives = 80/133 (59%), Gaps = 4/133 (3%)
Frame = -3
Query: 804 MAPLRNMFPNLVTKEELATKDELDGFRKHVTSLAALDFLVCLKSDVFVMTPGGNFAKLII 625
MAPLR MFP L TK+ LAT +EL F+ H + LAALD+ VCL S+VFV T GGNF +I
Sbjct: 527 MAPLRQMFPLLQTKDTLATPEELAPFKGHSSRLAALDYTVCLHSEVFVSTQGGNFPHFLI 586
Query: 624 GARRYM--GHRLKSIKPDQGLMSKSFGDPYMGWATFVEDV--VVTHQTRTGLPEETFPNY 457
G RRY+ GH ++IKPD+ + + P + W F + + ++ H G+ E P
Sbjct: 587 GHRRYLYKGH-AETIKPDKRKLVQLLDKPSIRWDYFKKQMQDMLRHNDAKGV-ELRKPAA 644
Query: 456 DLWENPLTPCMCK 418
L+ P+ CMCK
Sbjct: 645 SLYTFPMPDCMCK 657
>gb|AAK93632.1| putative growth regulator protein [Arabidopsis thaliana]
Length = 568
Score = 99.8 bits (247), Expect = 4e-20
Identities = 59/133 (44%), Positives = 80/133 (59%), Gaps = 4/133 (3%)
Frame = -3
Query: 804 MAPLRNMFPNLVTKEELATKDELDGFRKHVTSLAALDFLVCLKSDVFVMTPGGNFAKLII 625
MAPLR MFP L TK+ LAT +EL F+ H + LAALD+ VCL S+VFV T GGNF +I
Sbjct: 427 MAPLRQMFPLLQTKDTLATPEELAPFKGHSSRLAALDYTVCLHSEVFVSTQGGNFPHFLI 486
Query: 624 GARRYM--GHRLKSIKPDQGLMSKSFGDPYMGWATFVEDV--VVTHQTRTGLPEETFPNY 457
G RRY+ GH ++IKPD+ + + P + W F + + ++ H G+ E P
Sbjct: 487 GHRRYLYKGH-AETIKPDKRKLVQLLDKPSIRWDYFKKQMQDMLRHNDAKGV-ELRKPAA 544
Query: 456 DLWENPLTPCMCK 418
L+ P+ CMCK
Sbjct: 545 SLYTFPMPDCMCK 557
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 740,289,456
Number of Sequences: 1393205
Number of extensions: 17046383
Number of successful extensions: 33126
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 32069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33104
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
