Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008903A_C01 KMC008903A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC12821.1| lysyl-tRNA synthetase [Nicotiana tabacum] 66 3e-10
gb|AAH27356.1| Similar to lysyl-tRNA synthetase [Mus musculus] 64 2e-09
gb|AAH46578.1| Similar to lysyl-tRNA synthetase [Xenopus laevis] 64 2e-09
ref|NP_444322.1| lysyl-tRNA synthetase; DNA segment, Chr 8, Wayn... 64 2e-09
dbj|BAC41133.1| unnamed protein product [Mus musculus] 64 2e-09
>emb|CAC12821.1| lysyl-tRNA synthetase [Nicotiana tabacum]
Length = 169
Score = 66.2 bits (160), Expect = 3e-10
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = -2
Query: 569 GWGLGIDRLTMILTDSQNIKEVLLFPAMKPQD 474
GWGLGIDRL M+LTDSQNIKEVLLFPAMKPQD
Sbjct: 94 GWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQD 125
>gb|AAH27356.1| Similar to lysyl-tRNA synthetase [Mus musculus]
Length = 624
Score = 63.5 bits (153), Expect = 2e-09
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -2
Query: 569 GWGLGIDRLTMILTDSQNIKEVLLFPAMKPQD 474
GWG+GIDRLTM LTDS NIKEVLLFPAMKP+D
Sbjct: 573 GWGMGIDRLTMFLTDSNNIKEVLLFPAMKPED 604
>gb|AAH46578.1| Similar to lysyl-tRNA synthetase [Xenopus laevis]
Length = 605
Score = 63.5 bits (153), Expect = 2e-09
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -2
Query: 569 GWGLGIDRLTMILTDSQNIKEVLLFPAMKPQD 474
GWG+GIDRLTM LTDS NIKEVLLFPAMKP+D
Sbjct: 558 GWGMGIDRLTMFLTDSNNIKEVLLFPAMKPED 589
>ref|NP_444322.1| lysyl-tRNA synthetase; DNA segment, Chr 8, Wayne State University
108, expressed [Mus musculus]
gi|20178134|sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase
(Lysine--tRNA ligase) (LysRS) gi|13345380|gb|AAK19309.1|
lysyl-tRNA synthetase [Mus musculus]
gi|23273634|gb|AAH36289.1| Similar to lysyl-tRNA
synthetase [Mus musculus]
Length = 595
Score = 63.5 bits (153), Expect = 2e-09
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -2
Query: 569 GWGLGIDRLTMILTDSQNIKEVLLFPAMKPQD 474
GWG+GIDRLTM LTDS NIKEVLLFPAMKP+D
Sbjct: 544 GWGMGIDRLTMFLTDSNNIKEVLLFPAMKPED 575
>dbj|BAC41133.1| unnamed protein product [Mus musculus]
Length = 595
Score = 63.5 bits (153), Expect = 2e-09
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -2
Query: 569 GWGLGIDRLTMILTDSQNIKEVLLFPAMKPQD 474
GWG+GIDRLTM LTDS NIKEVLLFPAMKP+D
Sbjct: 544 GWGMGIDRLTMFLTDSNNIKEVLLFPAMKPED 575
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,706,146
Number of Sequences: 1393205
Number of extensions: 10279178
Number of successful extensions: 20460
Number of sequences better than 10.0: 323
Number of HSP's better than 10.0 without gapping: 20047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20453
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
