Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008890A_C01 KMC008890A_c01
(412 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S38468 hypothetical protein C179 - Desulfurococcus mobilis ... 32 1.9
ref|NP_285628.1| hypothetical protein [Deinococcus radiodurans] ... 31 3.2
ref|NP_281246.1| ribonucleoside-diphosphate reductase alpha chai... 31 4.2
ref|NP_060100.1| hypothetical protein FLJ20034 [Homo sapiens] gi... 30 5.4
ref|XP_136836.1| similar to glyceraldehyde-3-phosphate dehydroge... 30 7.1
>pir||S38468 hypothetical protein C179 - Desulfurococcus mobilis
gi|581024|emb|CAA51988.1| ORFC 179 [Desulfurococcus
mobilis]
Length = 179
Score = 32.0 bits (71), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 171 SLHSGSVVRSYSICPVLYVVPWSR-PDVNYLRLGVC 67
++ S R YS+CPV+ ++PWS P + + G C
Sbjct: 120 TVFSSKYPRRYSMCPVIVLLPWSTCPIITIFKCGFC 155
>ref|NP_285628.1| hypothetical protein [Deinococcus radiodurans]
gi|7472763|pir||F75584 hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6460809|gb|AAF12514.1|AE001863_139 hypothetical
protein [Deinococcus radiodurans]
Length = 709
Score = 31.2 bits (69), Expect = 3.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 334 GVRLEPLGRIAYRYWFKLVG*FYDSHLSLWVGSGAL 227
G R EPLG A LVG + S LS+W+G+ L
Sbjct: 261 GARTEPLGLAALAGTLLLVGLYGHSRLSVWLGAAGL 296
>ref|NP_281246.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
jejuni] gi|11256462|pir||C81418
ribonucleoside-diphosphate reductase (EC 1.17.4.1) alpha
chain Cj0024 [imported] - Campylobacter jejuni (strain
NCTC 11168) gi|6967529|emb|CAB72517.1|
ribonucleoside-diphosphate reductase alpha chain
[Campylobacter jejuni subsp. jejuni NCTC 11168]
Length = 789
Score = 30.8 bits (68), Expect = 4.2
Identities = 10/31 (32%), Positives = 18/31 (57%)
Frame = -2
Query: 108 WSRPDVNYLRLGVCITCFRNASKRKNKNTHI 16
W + +NY G+ CF++++ R N N H+
Sbjct: 386 WKKILLNYFETGLPFLCFKDSANRANPNAHV 416
>ref|NP_060100.1| hypothetical protein FLJ20034 [Homo sapiens]
gi|7019865|dbj|BAA90900.1| unnamed protein product [Homo
sapiens]
Length = 159
Score = 30.4 bits (67), Expect = 5.4
Identities = 18/52 (34%), Positives = 20/52 (37%)
Frame = -1
Query: 247 WVGSGALLSYGYPVWKS*GVYRIYGVIA*WVRC*ILFYLSCPLCCALVKARC 92
W G A+LS G P+W S W RC PLCC RC
Sbjct: 109 WAGFMAILSPGLPLWPS------------WDRC----LAPQPLCCGFTGNRC 144
>ref|XP_136836.1| similar to glyceraldehyde-3-phosphate dehydrogenase [Mus musculus]
Length = 176
Score = 30.0 bits (66), Expect = 7.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 222 PMVTQCGNHREYIGSMESLHSGSVVRSYSICPVLYVVPW 106
PM NH +Y S++ + + S Y+ LYV PW
Sbjct: 127 PMFVMGVNHEKYDNSLKIVSNASCTTKYTFLTGLYVSPW 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,838,107
Number of Sequences: 1393205
Number of extensions: 7847404
Number of successful extensions: 13980
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13980
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
