Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008880A_C01 KMC008880A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC86996.1| ATP citrate lyase b-subunit [Lupinus albus] 182 2e-45
ref|NP_172537.1| ATP citrate-lyase, putative; protein id: At1g10... 172 2e-42
ref|NP_176280.1| ATP citrate-lyase, putative; protein id: At1g60... 172 2e-42
gb|AAL91162.1| similar to ATP-citrate-lyase [Arabidopsis thalian... 172 2e-42
gb|AAM65078.1| ATP citrate-lyase, putative [Arabidopsis thaliana] 169 2e-41
>emb|CAC86996.1| ATP citrate lyase b-subunit [Lupinus albus]
Length = 423
Score = 182 bits (461), Expect = 2e-45
Identities = 88/96 (91%), Positives = 93/96 (96%)
Frame = -3
Query: 458 PDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHLYVRRGGPNYQKGLAK 279
PDGQKRALV+GGGIANFTDVAATFSGIIRALKEKE KLK A+MH+YVRRGGPNYQKGLAK
Sbjct: 328 PDGQKRALVVGGGIANFTDVAATFSGIIRALKEKESKLKAARMHIYVRRGGPNYQKGLAK 387
Query: 278 MRALGEEIGIPIEVYGPEATMTGICKQAIQCITAAA 171
MR LGEEIGIPIEVYGPEATMTGICK+AIQCITA+A
Sbjct: 388 MRELGEEIGIPIEVYGPEATMTGICKEAIQCITASA 423
>ref|NP_172537.1| ATP citrate-lyase, putative; protein id: At1g10670.1, supported by
cDNA: 36439., supported by cDNA: gi_15810348, supported
by cDNA: gi_16648641, supported by cDNA: gi_20453213,
supported by cDNA: gi_21280802 [Arabidopsis thaliana]
gi|6573737|gb|AAF17657.1|AC009398_6 F20B24.11
[Arabidopsis thaliana] gi|15810349|gb|AAL07062.1|
putative ATP citrate-lyase [Arabidopsis thaliana]
gi|16648642|gb|AAL25637.1| ATP-citrate lyase subunit A
[Arabidopsis thaliana] gi|20453214|gb|AAM19846.1|
At1g10670/F20B24_11 [Arabidopsis thaliana]
gi|21280803|gb|AAM45027.1| putative ATP citrate-lyase
[Arabidopsis thaliana]
Length = 423
Score = 172 bits (435), Expect = 2e-42
Identities = 83/96 (86%), Positives = 92/96 (95%)
Frame = -3
Query: 458 PDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHLYVRRGGPNYQKGLAK 279
PDG+ RALVIGGGIANFTDVAATF+GIIRALKEKE KLK A+MH++VRRGGPNYQKGLAK
Sbjct: 328 PDGKSRALVIGGGIANFTDVAATFNGIIRALKEKEAKLKAARMHIFVRRGGPNYQKGLAK 387
Query: 278 MRALGEEIGIPIEVYGPEATMTGICKQAIQCITAAA 171
MRALG++IG+PIEVYGPEATMTGICK+AIQ ITAAA
Sbjct: 388 MRALGDDIGVPIEVYGPEATMTGICKEAIQYITAAA 423
>ref|NP_176280.1| ATP citrate-lyase, putative; protein id: At1g60810.1, supported by
cDNA: gi_19698852 [Arabidopsis thaliana]
gi|25404292|pir||F96633 hypothetical protein F8A5.32
[imported] - Arabidopsis thaliana
gi|2462746|gb|AAB71965.1| Similar to ATP-citrate-lyase
[Arabidopsis thaliana]
Length = 423
Score = 172 bits (435), Expect = 2e-42
Identities = 83/96 (86%), Positives = 92/96 (95%)
Frame = -3
Query: 458 PDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHLYVRRGGPNYQKGLAK 279
PDG+ RALVIGGGIANFTDVAATF+GIIRALKEKE KLK A+MH++VRRGGPNYQKGLAK
Sbjct: 328 PDGKSRALVIGGGIANFTDVAATFNGIIRALKEKEAKLKAARMHIFVRRGGPNYQKGLAK 387
Query: 278 MRALGEEIGIPIEVYGPEATMTGICKQAIQCITAAA 171
MR+LG+EIG+PIEVYGPEATMTGICK+AIQ ITAAA
Sbjct: 388 MRSLGDEIGVPIEVYGPEATMTGICKEAIQYITAAA 423
>gb|AAL91162.1| similar to ATP-citrate-lyase [Arabidopsis thaliana]
gi|22136126|gb|AAM91141.1| similar to ATP-citrate-lyase
[Arabidopsis thaliana]
Length = 423
Score = 172 bits (435), Expect = 2e-42
Identities = 83/96 (86%), Positives = 92/96 (95%)
Frame = -3
Query: 458 PDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHLYVRRGGPNYQKGLAK 279
PDG+ RALVIGGGIANFTDVAATF+GIIRALKEKE KLK A+MH++VRRGGPNYQKGLAK
Sbjct: 328 PDGKSRALVIGGGIANFTDVAATFNGIIRALKEKEAKLKAARMHIFVRRGGPNYQKGLAK 387
Query: 278 MRALGEEIGIPIEVYGPEATMTGICKQAIQCITAAA 171
MR+LG+EIG+PIEVYGPEATMTGICK+AIQ ITAAA
Sbjct: 388 MRSLGDEIGVPIEVYGPEATMTGICKEAIQYITAAA 423
>gb|AAM65078.1| ATP citrate-lyase, putative [Arabidopsis thaliana]
Length = 423
Score = 169 bits (427), Expect = 2e-41
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = -3
Query: 458 PDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHLYVRRGGPNYQKGLAK 279
PDG+ RALVIGGGIANFTDVAATF+GIIRALKEKE KLK A+MH++VRRG PNYQKGLAK
Sbjct: 328 PDGKSRALVIGGGIANFTDVAATFNGIIRALKEKEAKLKAARMHIFVRRGRPNYQKGLAK 387
Query: 278 MRALGEEIGIPIEVYGPEATMTGICKQAIQCITAAA 171
MRALG++IG+PIEVYGPEATMTGICK+AIQ ITAAA
Sbjct: 388 MRALGDDIGVPIEVYGPEATMTGICKEAIQYITAAA 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,408,151
Number of Sequences: 1393205
Number of extensions: 7664067
Number of successful extensions: 19113
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 18642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19112
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
