Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008879A_C01 KMC008879A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172371.1| putative transcription factor; protein id: At1g... 52 8e-06
gb|AAF06791.1|AF193440_1 heme activated protein [Arabidopsis tha... 52 8e-06
pir||E86221 hypothetical protein [imported] - Arabidopsis thalia... 52 8e-06
ref|NP_175880.1| heme activated protein, putative; protein id: A... 44 0.002
ref|NP_190428.1| transcription factor Hap5a; protein id: At3g485... 43 0.003
>ref|NP_172371.1| putative transcription factor; protein id: At1g08970.1, supported
by cDNA: 1911. [Arabidopsis thaliana]
gi|21553992|gb|AAM63073.1| putative transcription factor
[Arabidopsis thaliana] gi|22022532|gb|AAM83224.1|
At1g08970/F7G19_16 [Arabidopsis thaliana]
gi|23505813|gb|AAN28766.1| At1g08970/F7G19_16
[Arabidopsis thaliana]
Length = 231
Score = 51.6 bits (122), Expect = 8e-06
Identities = 32/76 (42%), Positives = 38/76 (49%), Gaps = 1/76 (1%)
Frame = -2
Query: 613 DEVLASIPRGSMP-VAGPGDALPYCYGMPQPVGPAGVIMGKPVMDPNMYAQQSHPYMAPP 437
DEVL SIPRG++P A G Y P+G G++MG P A +PYM P
Sbjct: 163 DEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNPGMVMGNP-----GGAYPPNPYMGQP 217
Query: 436 MWPQPQDQQRPPSPDQ 389
MW QQ P PDQ
Sbjct: 218 MW----QQQAPDQPDQ 229
>gb|AAF06791.1|AF193440_1 heme activated protein [Arabidopsis thaliana]
Length = 231
Score = 51.6 bits (122), Expect = 8e-06
Identities = 32/76 (42%), Positives = 38/76 (49%), Gaps = 1/76 (1%)
Frame = -2
Query: 613 DEVLASIPRGSMP-VAGPGDALPYCYGMPQPVGPAGVIMGKPVMDPNMYAQQSHPYMAPP 437
DEVL SIPRG++P A G Y P+G G++MG P A +PYM P
Sbjct: 163 DEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNPGMVMGNP-----GGAYPPNPYMGQP 217
Query: 436 MWPQPQDQQRPPSPDQ 389
MW QQ P PDQ
Sbjct: 218 MW----QQQAPDQPDQ 229
>pir||E86221 hypothetical protein [imported] - Arabidopsis thaliana
gi|1922964|gb|AAB70410.1| Similar to Schizosaccharomyces
CCAAT-binding factor (gb|U88525). EST gb|T04310 comes
from this gene. [Arabidopsis thaliana]
Length = 208
Score = 51.6 bits (122), Expect = 8e-06
Identities = 32/76 (42%), Positives = 38/76 (49%), Gaps = 1/76 (1%)
Frame = -2
Query: 613 DEVLASIPRGSMP-VAGPGDALPYCYGMPQPVGPAGVIMGKPVMDPNMYAQQSHPYMAPP 437
DEVL SIPRG++P A G Y P+G G++MG P A +PYM P
Sbjct: 140 DEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNPGMVMGNP-----GGAYPPNPYMGQP 194
Query: 436 MWPQPQDQQRPPSPDQ 389
MW QQ P PDQ
Sbjct: 195 MW----QQQAPDQPDQ 206
>ref|NP_175880.1| heme activated protein, putative; protein id: At1g54830.1
[Arabidopsis thaliana] gi|3776575|gb|AAC64892.1| Similar
to Schizosaccharomyces CCAAT-binding factor F7G19.16
gi|1922964 from Arabidopsis thaliana BAC gb|AC000106.
EST gb|H36963 comes from this gene
gi|12322158|gb|AAG51114.1|AC069144_11 heme activated
protein, putative [Arabidopsis thaliana]
gi|17065398|gb|AAL32853.1| Unknown protein [Arabidopsis
thaliana] gi|20148651|gb|AAM10216.1| unknown protein
[Arabidopsis thaliana] gi|21593110|gb|AAM65059.1| heme
activated protein, putative [Arabidopsis thaliana]
Length = 217
Score = 43.9 bits (102), Expect = 0.002
Identities = 27/73 (36%), Positives = 35/73 (46%), Gaps = 2/73 (2%)
Frame = -2
Query: 613 DEVLASIPRGSMPVAGPGDALPYCYGMP--QPVGPAGVIMGKPVMDPNMYAQQSHPYMAP 440
DEVL + + AG PY Y P P+G G++MG P P +PYM
Sbjct: 153 DEVLGGVGAEAATAAG----YPYGYLPPGTAPIGNPGMVMGNPGAYP------PNPYMGQ 202
Query: 439 PMWPQPQDQQRPP 401
PMW QP +Q+ P
Sbjct: 203 PMWQQPGPEQQDP 215
>ref|NP_190428.1| transcription factor Hap5a; protein id: At3g48590.1, supported by
cDNA: 21604., supported by cDNA: gi_20260195
[Arabidopsis thaliana] gi|11358886|pir||T46203
transcription factor Hap5a - Arabidopsis thaliana
gi|6523090|emb|CAB62348.1| transcription factor Hap5a
[Arabidopsis thaliana] gi|20260196|gb|AAM12996.1|
transcription factor Hap5a [Arabidopsis thaliana]
gi|21554251|gb|AAM63326.1| transcription factor Hap5a
[Arabidopsis thaliana] gi|24899757|gb|AAN65093.1|
transcription factor Hap5a [Arabidopsis thaliana]
Length = 234
Score = 43.1 bits (100), Expect = 0.003
Identities = 22/48 (45%), Positives = 30/48 (61%), Gaps = 2/48 (4%)
Frame = -2
Query: 601 ASIPRGSMPVAGPGDALPYCYG-MPQPVGPAGVIMGKPVMDPN-MYAQ 464
A++ G M VA +PY Y M QP GP G+++G+P MDPN +Y Q
Sbjct: 150 AAVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMIGRPAMDPNGVYVQ 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,953,845
Number of Sequences: 1393205
Number of extensions: 13396076
Number of successful extensions: 41313
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 35746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40457
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
