Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008855A_C01 KMC008855A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06329 symbiotic ammonium transport protein SAT1 - soybean ... 87 2e-16
gb|AAM10935.1|AF488563_1 putative bHLH transcription factor [Ara... 82 7e-15
gb|AAM10934.1| putative bHLH transcription factor [Arabidopsis t... 78 7e-14
gb|AAD11428.1| transporter homolog [Mesembryanthemum crystallinum] 77 2e-13
ref|NP_179860.1| bHLH protein; protein id: At2g22750.1 [Arabidop... 75 8e-13
>pir||T06329 symbiotic ammonium transport protein SAT1 - soybean
gi|3399777|gb|AAC32828.1| symbiotic ammonium
transporter; nodulin [Glycine max]
Length = 347
Score = 86.7 bits (213), Expect = 2e-16
Identities = 51/122 (41%), Positives = 69/122 (55%)
Frame = -2
Query: 587 EKQEKKNGVEKVIVIKKPDLRGNEDTTNSGDIITTSSDHDDCSTILPEIAARALGKEVLI 408
E+Q +K VE V+++KK L + + ++S T + LPEI AR + VLI
Sbjct: 226 EEQNRKRTVESVVIVKKSQLSSDAEDSSS----ETGGTFVEA---LPEIEARFWERNVLI 278
Query: 407 EIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALSVTVIAQMGDAYGMTMNDLVNS 228
IHCEK G K + +E LHL V SS L FG+ L +T+IAQM + MT+ DLV S
Sbjct: 279 RIHCEKNKGVIEKTISEIEKLHLKVINSSALTFGSFILDITIIAQMDMEFCMTVKDLVRS 338
Query: 227 LR 222
LR
Sbjct: 339 LR 340
>gb|AAM10935.1|AF488563_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 295
Score = 81.6 bits (200), Expect = 7e-15
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = -2
Query: 587 EKQEKKNGVEKVIVIKKPDLRGNEDTTNSGDIITTSSDHDDCSTILPEIAARALGKEVLI 408
E++E +E +I++KK + +E+ S + S H + LPEI A+ ++LI
Sbjct: 173 EEKEATRQMESMILVKKSKVFFDEEPNLS----CSPSVHIEFDQALPEIEAKISQNDILI 228
Query: 407 EIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALSVTVIAQMGDAYGMT-MNDLVN 231
I CEK G + IL+ +EN L + S VLPFG+S L +TV+AQM + M+ + DLV
Sbjct: 229 RILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQMDKDFSMSILKDLVR 288
Query: 230 SLRPLLL 210
+LRP ++
Sbjct: 289 NLRPAMV 295
>gb|AAM10934.1| putative bHLH transcription factor [Arabidopsis thaliana]
Length = 304
Score = 78.2 bits (191), Expect = 7e-14
Identities = 45/121 (37%), Positives = 75/121 (61%)
Frame = -2
Query: 587 EKQEKKNGVEKVIVIKKPDLRGNEDTTNSGDIITTSSDHDDCSTILPEIAARALGKEVLI 408
E+Q+K+ +E V+++KK L +E+ S ++ + + S+ LPEI R GK+VLI
Sbjct: 179 EEQKKEKTMESVVLVKKSSLVLDENHQPSSSS-SSDGNRNSSSSNLPEIEVRVSGKDVLI 237
Query: 407 EIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALSVTVIAQMGDAYGMTMNDLVNS 228
+I CEK+ G +KI+ +E L LS+ S+VLPFG +++IAQ + + M + D+V +
Sbjct: 238 KILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFG-PTFDISIIAQ-NNNFDMKIEDVVKN 295
Query: 227 L 225
L
Sbjct: 296 L 296
>gb|AAD11428.1| transporter homolog [Mesembryanthemum crystallinum]
Length = 300
Score = 76.6 bits (187), Expect = 2e-13
Identities = 39/122 (31%), Positives = 70/122 (56%)
Frame = -2
Query: 587 EKQEKKNGVEKVIVIKKPDLRGNEDTTNSGDIITTSSDHDDCSTILPEIAARALGKEVLI 408
E+Q VE V+++K +++ + + + G+ + + + + L EI A A VLI
Sbjct: 171 EEQTASRTVESVVLVKNSNVQ-DPNLDHGGNSSSNENSNSSLNNPLLEIEAGACNNNVLI 229
Query: 407 EIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALSVTVIAQMGDAYGMTMNDLVNS 228
IH +K+ K+L+ +ENLHL+ + +PFG A+ +T++AQM D + +T+ D+V
Sbjct: 230 RIHAQKDQDLVRKVLNEIENLHLTTLNFNTIPFGGYAMDITIVAQMDDDFELTIKDVVMH 289
Query: 227 LR 222
LR
Sbjct: 290 LR 291
>ref|NP_179860.1| bHLH protein; protein id: At2g22750.1 [Arabidopsis thaliana]
gi|25412135|pir||D84616 probable bHLH transcription
factor [imported] - Arabidopsis thaliana
gi|3738089|gb|AAC63586.1| putative bHLH transcription
factor [Arabidopsis thaliana] gi|20197757|gb|AAM15234.1|
putative bHLH transcription factor [Arabidopsis
thaliana]
Length = 288
Score = 74.7 bits (182), Expect = 8e-13
Identities = 41/106 (38%), Positives = 67/106 (62%)
Frame = -2
Query: 587 EKQEKKNGVEKVIVIKKPDLRGNEDTTNSGDIITTSSDHDDCSTILPEIAARALGKEVLI 408
E+Q+K+ +E V+++KK L +E+ S ++ + + S+ LPEI R GK+VLI
Sbjct: 179 EEQKKEKTMESVVLVKKSSLVLDENHQPSSSS-SSDGNRNSSSSNLPEIEVRVSGKDVLI 237
Query: 407 EIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALSVTVIAQM 270
+I CEK+ G +KI+ +E L LS+ S+VLPFG +++IAQ+
Sbjct: 238 KILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFG-PTFDISIIAQV 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,511,135
Number of Sequences: 1393205
Number of extensions: 10100832
Number of successful extensions: 27174
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27163
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
