Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008831A_C01 KMC008831A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA26843.1| predicted protein [Neurospora crassa] 33 2.6
ref|XP_284439.1| RIKEN cDNA 1810014J18 [Mus musculus] 32 5.7
dbj|BAC41410.1| mKIAA0308 protein [Mus musculus] 32 5.7
pir||S48124 catalase (EC 1.11.1.6) 1 - maize gi|311239|emb|CAA42... 32 5.7
sp|P18122|CAT1_MAIZE Catalase isozyme 1 32 5.7
>gb|EAA26843.1| predicted protein [Neurospora crassa]
Length = 831
Score = 33.1 bits (74), Expect = 2.6
Identities = 18/44 (40%), Positives = 28/44 (62%)
Frame = +3
Query: 444 LPCHLCA*YPQLRSHSQAAQSSSLASVPSAAFENSSMSSSSSSS 575
+P H+ A + HS +++SS +S S++ +SS SSSSSSS
Sbjct: 449 IPSHMSASSGPRQGHSSTSRNSSSSSSSSSSSSSSSSSSSSSSS 492
>ref|XP_284439.1| RIKEN cDNA 1810014J18 [Mus musculus]
Length = 996
Score = 32.0 bits (71), Expect = 5.7
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +3
Query: 483 SHSQAAQSSSLASVPSAAFENSSMSSSSSSS 575
SHS++ SSS +S S+A +SS SSSSSSS
Sbjct: 268 SHSRSGSSSSSSSSCSSASSSSSSSSSSSSS 298
>dbj|BAC41410.1| mKIAA0308 protein [Mus musculus]
Length = 1047
Score = 32.0 bits (71), Expect = 5.7
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +3
Query: 483 SHSQAAQSSSLASVPSAAFENSSMSSSSSSS 575
SHS++ SSS +S S+A +SS SSSSSSS
Sbjct: 319 SHSRSGSSSSSSSSCSSASSSSSSSSSSSSS 349
>pir||S48124 catalase (EC 1.11.1.6) 1 - maize gi|311239|emb|CAA42720.1|
catalase-1 [Zea mays]
Length = 492
Score = 32.0 bits (71), Expect = 5.7
Identities = 21/53 (39%), Positives = 25/53 (46%), Gaps = 10/53 (18%)
Frame = +1
Query: 445 CPVIYVPSIHNSDHTLKQPSL--------HRL-HQYPLLHLRILQC-HHRLHH 573
CP I VP IH SD L Q + HRL Y +L + +C HH HH
Sbjct: 325 CPAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAHHNNHH 377
>sp|P18122|CAT1_MAIZE Catalase isozyme 1
Length = 492
Score = 32.0 bits (71), Expect = 5.7
Identities = 21/53 (39%), Positives = 26/53 (48%), Gaps = 10/53 (18%)
Frame = +1
Query: 445 CPVIYVPSIHNSDHTLKQPSL--------HRL-HQYPLLHLRILQC-HHRLHH 573
CP I VP+IH SD L Q + HRL Y +L + +C HH HH
Sbjct: 325 CPAISVPAIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAHHNNHH 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,430,000
Number of Sequences: 1393205
Number of extensions: 8455695
Number of successful extensions: 39957
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34980
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
