Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008818A_C01 KMC008818A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568366.1| triacylglycerol lipase-like protein; protein id... 46 3e-04
ref|NP_197365.1| triacylglycerol lipase-like protein; protein id... 46 4e-04
dbj|BAB64204.1| P0492G09.26 [Oryza sativa (japonica cultivar-gro... 44 0.002
emb|CAD32696.1| triacylglycerol lipase [Triticum aestivum] 42 0.005
emb|CAD32695.1| triacylglycerol Lipase [Triticum aestivum] 42 0.005
>ref|NP_568366.1| triacylglycerol lipase-like protein; protein id: At5g18630.1,
supported by cDNA: gi_16604395 [Arabidopsis thaliana]
gi|16604396|gb|AAL24204.1| AT5g18630/T1A4_10
[Arabidopsis thaliana] gi|23397205|gb|AAN31885.1|
putative triacylglycerol lipase [Arabidopsis thaliana]
Length = 357
Score = 46.2 bits (108), Expect = 3e-04
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = -2
Query: 560 GNSITDHLVYYGIDMGSDTPGSCRIVMDSNSNILSSGIRDSRGNLILSR--DPATLLKLS 387
GNSI+DHL Y+G+++ ++ C IVM+ + S +DSRGNL LSR P ++K S
Sbjct: 290 GNSISDHLRYFGVELKCESWRQCSIVMNQDMERYSR--KDSRGNLFLSRTVPPKDVVKTS 347
>ref|NP_197365.1| triacylglycerol lipase-like protein; protein id: At5g18640.1
[Arabidopsis thaliana]
Length = 369
Score = 45.8 bits (107), Expect = 4e-04
Identities = 22/49 (44%), Positives = 31/49 (62%)
Frame = -2
Query: 560 GNSITDHLVYYGIDMGSDTPGSCRIVMDSNSNILSSGIRDSRGNLILSR 414
GNSI+DHL Y+G+++ +T C IVM S +DS+GN+ LSR
Sbjct: 302 GNSISDHLTYFGVELMGETWRQCNIVMGHEMESYSR--KDSKGNIFLSR 348
>dbj|BAB64204.1| P0492G09.26 [Oryza sativa (japonica cultivar-group)]
Length = 271
Score = 43.5 bits (101), Expect = 0.002
Identities = 25/67 (37%), Positives = 37/67 (54%)
Frame = -2
Query: 563 SGNSITDHLVYYGIDMGSDTPGSCRIVMDSNSNILSSGIRDSRGNLILSRDPATLLKLSR 384
SG+S+ DH+ Y G+ M ++ SCRIVMD + D GN++LS+ L LS
Sbjct: 212 SGSSVQDHIYYLGVSMHAEAWSSCRIVMDYSKLRYR---MDINGNIVLSKH----LGLSG 264
Query: 383 GFDHQDK 363
+H D+
Sbjct: 265 DLEHSDQ 271
>emb|CAD32696.1| triacylglycerol lipase [Triticum aestivum]
Length = 350
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = -2
Query: 563 SGNSITDHLVYYGIDMGSDTPGSCRIVMDSNSNILSSGIRDSRGNLILSR 414
SGNSI DH+ Y G+ M ++ SCRIVMD D GN++LS+
Sbjct: 287 SGNSIQDHITYLGVSMHAEAWSSCRIVMDYAELRYK---MDLHGNVVLSK 333
>emb|CAD32695.1| triacylglycerol Lipase [Triticum aestivum]
Length = 350
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = -2
Query: 563 SGNSITDHLVYYGIDMGSDTPGSCRIVMDSNSNILSSGIRDSRGNLILSR 414
SGNSI DH+ Y G+ M ++ SCRIVMD D GN++LS+
Sbjct: 286 SGNSIQDHITYLGVSMHAEAWSSCRIVMDYAELRYK---MDLHGNVVLSK 332
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,850,650
Number of Sequences: 1393205
Number of extensions: 8220205
Number of successful extensions: 17170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17164
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
