Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008813A_C01 KMC008813A_c01
(402 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK97540.1|AF411083_1 surfactant protein A precursor [Gallus ... 31 3.2
ref|NP_715336.1| Uncharacterized protein involved in tolerance t... 30 5.5
ref|NP_454693.1| putative membrane protein [Salmonella enterica ... 30 5.5
ref|NP_459088.1| putative inner membrane protein [Salmonella typ... 30 7.2
gb|AAM55488.1| HctC [Haemophilus paragallinarum] 30 9.4
>gb|AAK97540.1|AF411083_1 surfactant protein A precursor [Gallus gallus]
Length = 222
Score = 31.2 bits (69), Expect = 3.2
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Frame = -2
Query: 335 FKTLLLSQCLEKVPSCN----------SVLEEIKTVLLLLRNKIKQVQGIMQLTRNITK 189
F +LL EK+P C S +E+ VLL LR +I Q++G++ L ITK
Sbjct: 49 FGSLLWPYGEEKLPECQWLQRQQDLSTSSDDELGNVLLNLRQRILQLEGVLALDGKITK 107
>ref|NP_715336.1| Uncharacterized protein involved in tolerance to divalent cations
[Wigglesworthia brevipalpis] gi|25166352|dbj|BAC24542.1|
cutA [Wigglesworthia brevipalpis]
Length = 123
Score = 30.4 bits (67), Expect = 5.5
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 6/48 (12%)
Frame = -2
Query: 320 LSQCLEKVPSC------NSVLEEIKTVLLLLRNKIKQVQGIMQLTRNI 195
L+ C+ K+P N +LEE K V +L+++ IK + + L +NI
Sbjct: 43 LAACVTKIPEVISFYYWNKILEEKKEVQILIKSHIKLRKKVFSLIKNI 90
>ref|NP_454693.1| putative membrane protein [Salmonella enterica subsp. enterica
serovar Typhi] gi|29140626|ref|NP_803968.1| putative
membrane protein [Salmonella enterica subsp. enterica
serovar Typhi Ty2] gi|25512400|pir||AE0512 probable
membrane protein STY0096 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16501366|emb|CAD01237.1| putative membrane protein
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29136250|gb|AAO67817.1| putative membrane protein
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 64
Score = 30.4 bits (67), Expect = 5.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 302 SLNIVKVAGF*ITVTELLISRS*CCCNC 385
S++ +K+A F +TV L+I S CCC C
Sbjct: 22 SVDYLKIALFGVTVLYLVIVTSLCCCQC 49
>ref|NP_459088.1| putative inner membrane protein [Salmonella typhimurium LT2]
gi|16418580|gb|AAL19047.1| putative inner membrane
protein [Salmonella typhimurium LT2]
Length = 64
Score = 30.0 bits (66), Expect = 7.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 302 SLNIVKVAGF*ITVTELLISRS*CCCNC 385
S++ +K+A F +TV L+I S CCC C
Sbjct: 22 SVDYLKIALFGVTVFYLVIVTSLCCCQC 49
>gb|AAM55488.1| HctC [Haemophilus paragallinarum]
Length = 387
Score = 29.6 bits (65), Expect = 9.4
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 163 KLWTWQRRVLVMFLVNCIMPCTCLILFLS-RSNTVFISSST 282
KL W R++ ++FL+ I+P C + + S ++ V+IS S+
Sbjct: 15 KLKQWLRKINLLFLLTVIIPTFCSLFYFSIWASDVYISESS 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,105,763
Number of Sequences: 1393205
Number of extensions: 4762757
Number of successful extensions: 7693
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7693
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
