Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008810A_C01 KMC008810A_c01
(325 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_503913.1| Predicted CDS, putative membrane protein family... 32 2.1
ref|NP_503940.1| Predicted CDS, putative membrane protein family... 31 4.7
>ref|NP_503913.1| Predicted CDS, putative membrane protein family member, with at
least 2 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7500545|pir||T15151
hypothetical protein F35F10.9 - Caenorhabditis elegans
gi|9802929|gb|AAF99938.1| Hypothetical protein F35F10.9
[Caenorhabditis elegans]
Length = 295
Score = 32.0 bits (71), Expect = 2.1
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 5/51 (9%)
Frame = -3
Query: 272 CIYLTIIIPLVSLANMNQSIRYMCCFSNPTPF-----LLTCVHDNLYFVYW 135
C + I+I +SLA + I Y+ C N + +L C DN YF YW
Sbjct: 129 CPSILILILAISLAMLENLIIYLFCTLNISAIPRDCGVLRCSLDNCYFNYW 179
>ref|NP_503940.1| Predicted CDS, putative membrane protein family member, with at
least 2 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7495342|pir||T33417
hypothetical protein C04E12.9 - Caenorhabditis elegans
gi|3335250|gb|AAC27086.1| Hypothetical protein C04E12.9
[Caenorhabditis elegans]
Length = 358
Score = 30.8 bits (68), Expect = 4.7
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 5/51 (9%)
Frame = -3
Query: 272 CIYLTIIIPLVSLANMNQSIRYMCCFSNPTPF-----LLTCVHDNLYFVYW 135
C + I+I + LA + I Y+ C N + +L C DN YF YW
Sbjct: 179 CPSIIILILAIGLAMLENLILYLFCTLNISAIPRDCGVLRCSLDNCYFNYW 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,014,288
Number of Sequences: 1393205
Number of extensions: 5015090
Number of successful extensions: 8192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8190
length of database: 448,689,247
effective HSP length: 83
effective length of database: 333,053,232
effective search space used: 7993277568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
