Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008807A_C01 KMC008807A_c01
(760 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK19776.1| maturase K [Mammillaria haageana] 35 0.90
gb|EAA16753.1| Streptococcus pyogenes AMV156, putative [Plasmodi... 35 1.5
gb|AAK19788.1| maturase K [Eulychnia iquiquensis] 33 3.4
gb|AAK19780.1| maturase K [Copiapoa bridgesii] 33 5.8
gb|AAK19781.1| maturase K [Copiapoa laui] 33 5.8
>gb|AAK19776.1| maturase K [Mammillaria haageana]
Length = 510
Score = 35.4 bits (80), Expect = 0.90
Identities = 30/92 (32%), Positives = 47/92 (50%), Gaps = 12/92 (13%)
Frame = -1
Query: 577 ELHKPLSTYHSRFSDFFF*KIIQTHIY*CINE----IIKSEFRL--ISSPSSTFFHQKSS 416
+ H LS HS +DFF K + Y I+E I++ F L ISSP + +Q
Sbjct: 66 QTHLILSANHSNQNDFFGHKHKKNLYYQIISEGFAVIVEIPFSLLLISSPEAEE-NQIVK 124
Query: 415 SSNIKKIH------ETKFIHINFIILA*LLFP 338
S N++ IH E KF+H+N+++ + +P
Sbjct: 125 SHNLRSIHSIFPFFEDKFLHLNYVLEILIPYP 156
>gb|EAA16753.1| Streptococcus pyogenes AMV156, putative [Plasmodium yoelii yoelii]
Length = 1319
Score = 34.7 bits (78), Expect = 1.5
Identities = 35/119 (29%), Positives = 51/119 (42%)
Frame = -1
Query: 598 TQVKTCVELHKPLSTYHSRFSDFFF*KIIQTHIY*CINEIIKSEFRLISSPSSTFFHQKS 419
T VK+C + +P S + + S FFF I + + CIN I+ SEF L + + K
Sbjct: 771 TNVKSCFKC-QPTSLVN-KISMFFFLGIESSQLERCINHILSSEFELKNEEDNKSNEDKG 828
Query: 418 SSSNIKKIHETKFIHINFIILA*LLFPNNNKN*KKTNYLLSST*FQIQQHITINNKKQE 242
K H ++FII+ LL+ N Y+ + I I NKK E
Sbjct: 829 MKEKCKIFHFLNHF-LDFIII--LLWIKTNITSSDGKYV-----YNIYDKADIYNKKLE 879
>gb|AAK19788.1| maturase K [Eulychnia iquiquensis]
Length = 509
Score = 33.5 bits (75), Expect = 3.4
Identities = 27/91 (29%), Positives = 44/91 (47%), Gaps = 11/91 (12%)
Frame = -1
Query: 577 ELHKPLSTYHSRFSDFFF*KIIQTHIY*CINE----IIKSEFRLISSPSSTFFHQKS-SS 413
+ H L YHS +DFF K + Y I+E I++ F L+ S +K S
Sbjct: 66 QTHLILPAYHSNQNDFFGHKHKKNLYYQIISEGFAVIMEIPFSLLLISSLEAKEKKIVKS 125
Query: 412 SNIKKIH------ETKFIHINFIILA*LLFP 338
N++ IH E KF+H+N+++ + +P
Sbjct: 126 HNLRSIHSIFPFFEDKFLHLNYVLEILIPYP 156
>gb|AAK19780.1| maturase K [Copiapoa bridgesii]
Length = 507
Score = 32.7 bits (73), Expect = 5.8
Identities = 27/91 (29%), Positives = 44/91 (47%), Gaps = 11/91 (12%)
Frame = -1
Query: 577 ELHKPLSTYHSRFSDFFF*KIIQTHIY*CINE----IIKSEFRLISSPSSTFFHQKS-SS 413
+ H LS HS +DFF K + Y I+E I++ F L+ S +K S
Sbjct: 66 QTHLILSANHSNQNDFFGHKPKKNLYYQIISEGFAVIVEIPFSLLLISSLEAKEKKIVKS 125
Query: 412 SNIKKIH------ETKFIHINFIILA*LLFP 338
N++ IH E KF+H+N+++ + +P
Sbjct: 126 HNLRSIHSIFPFFEDKFLHLNYVLEILIPYP 156
>gb|AAK19781.1| maturase K [Copiapoa laui]
Length = 507
Score = 32.7 bits (73), Expect = 5.8
Identities = 27/91 (29%), Positives = 44/91 (47%), Gaps = 11/91 (12%)
Frame = -1
Query: 577 ELHKPLSTYHSRFSDFFF*KIIQTHIY*CINE----IIKSEFRLISSPSSTFFHQKS-SS 413
+ H LS HS +DFF K + Y I+E I++ F L+ S +K S
Sbjct: 66 QTHLILSANHSNQNDFFGHKHKKNLYYQIISEGFAVIVEIPFSLLLISSLEAKEKKIVKS 125
Query: 412 SNIKKIH------ETKFIHINFIILA*LLFP 338
N++ IH E KF+H+N+++ + +P
Sbjct: 126 HNLRSIHSIFPFFEDKFLHLNYVLEILIPYP 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 667,790,186
Number of Sequences: 1393205
Number of extensions: 15564354
Number of successful extensions: 45956
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 40933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45297
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
