>KMC008799A_C01 KMC008799A_c01
atGATGAAGAAGTGTGAATTTTCATTAATCATAACTTGCCTTTTAAATATAATTACAAAC
TGCAATATAGAACCAAACAAAATATAATATGACAACTGACTAACAATCTACCAAACTTCA
AATATCCAGCCGTCATAAGAGTTATTCAAACTTAAATAACAACTGAAAATCAGTAAATCT
AAATTTGAACTTCTGCAAAGCGGGCTACCAAGTCAAAGTATCAACATTCCTCCTTGAATG
ATTAGCTGAAAACTCAAAATTCACTTTGGGGAATGCTTTGATGAAAACTTCTGCCACTTG
CTCTTCAGCTATGCAATATTCTTAAGTTACTTCTCCTAGACTCCTACCATTCAGCTTCTC
TAAGAAAATAAAACTTGATCTTTGAATGTTTGGTCTTTCTCTGAAACAAGGGATGGTCGG
ATATGGATATAATAGCTTAATTATCAACAAAGAACTTCGGGTGCTCCATCGGCTCCATTG
GCAAATCAAGCAACAATTTCTGGATCCATAAGGGTGGATTTACAACGGTGGCTGGCAATA
AATTCTACTTCGGTATAATGGAGCCATAACATCCGGCATTTTTTACTCCAA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC008799A_C01 KMC008799A_c01
         (591 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_179167.1| putative retroelement pol polyprotein; protein ...    48  1e-06
ref|NP_189623.1| Ty1/Copia-type retroelement polyprotein; protei...    48  2e-06
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...    48  1e-05
ref|NP_191576.1| putative protein; protein id: At3g60170.1 [Arab...    40  1e-04
emb|CAD29539.1| polyprotein [Pichia angusta]                           46  4e-04

>ref|NP_179167.1| putative retroelement pol polyprotein; protein id: At2g15650.1
            [Arabidopsis thaliana] gi|25301699|pir||F84531 probable
            retroelement pol polyprotein [imported] - Arabidopsis
            thaliana gi|4335731|gb|AAD17409.1| putative retroelement
            pol polyprotein [Arabidopsis thaliana]
          Length = 1347

 Score = 47.8 bits (112), Expect(2) = 1e-06
 Identities = 22/57 (38%), Positives = 36/57 (62%)
 Frame = -3

Query: 520  NPPLWIQKLLLDLPMEPMEHPKFFVDN*AIISISDHPLFQRKTKHSKIKFYFLREAE 350
            N  +W+Q+L  D  ++  E      DN + I+I  +P+  R+TKH +IK++F+REAE
Sbjct: 1248 NQAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAE 1304

 Score = 26.2 bits (56), Expect(2) = 1e-06
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = -1

Query: 336  GEVT*EYCIAEEQVAEVFIKAFPKVNFE 253
            G +  EYC  E+Q+A+V  KA     FE
Sbjct: 1307 GLIQLEYCKGEDQLADVLTKALSVSRFE 1334

>ref|NP_189623.1| Ty1/Copia-type retroelement polyprotein; protein id: At3g29775.1
            [Arabidopsis thaliana]
          Length = 1348

 Score = 48.1 bits (113), Expect(2) = 2e-06
 Identities = 20/60 (33%), Positives = 39/60 (64%)
 Frame = -3

Query: 529  TVVNPPLWIQKLLLDLPMEPMEHPKFFVDN*AIISISDHPLFQRKTKHSKIKFYFLREAE 350
            +  N  +W+Q+L+ ++  +  +  + F DN + I+I  +P+  R+TKH  IK++F+REA+
Sbjct: 1247 SAANQAIWLQRLVNEIGFKAEKGIRIFCDNKSAIAIGKNPVQHRRTKHIDIKYHFVREAQ 1306

 Score = 25.0 bits (53), Expect(2) = 2e-06
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = -1

Query: 336  GEVT*EYCIAEEQVAEVFIKAFPKVNFE 253
            G++  EYC  E Q+A++  K      FE
Sbjct: 1309 GKIKLEYCPGELQIADILTKPLNTTRFE 1336

>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score = 48.1 bits (113), Expect(2) = 1e-05
 Identities = 20/60 (33%), Positives = 39/60 (64%)
 Frame = -3

Query: 529  TVVNPPLWIQKLLLDLPMEPMEHPKFFVDN*AIISISDHPLFQRKTKHSKIKFYFLREAE 350
            +  N  +W+Q+L+ ++  +  +  + F DN + I+I  +P+  R+TKH  IK++F+REA+
Sbjct: 1247 SAANQAIWLQRLVNEIGFKAEKGIRIFCDNKSAIAIGKNPVQHRRTKHIDIKYHFVREAQ 1306

 Score = 22.3 bits (46), Expect(2) = 1e-05
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 336  GEVT*EYCIAEEQVAEVFIK 277
            G++  EYC  E Q+A++  K
Sbjct: 1309 GKIKLEYCPGELQIADILTK 1328

>ref|NP_191576.1| putative protein; protein id: At3g60170.1 [Arabidopsis thaliana]
            gi|11278365|pir||T47841 hypothetical protein T2O9.150 -
            Arabidopsis thaliana gi|7076770|emb|CAB75932.1| putative
            protein [Arabidopsis thaliana]
          Length = 1339

 Score = 40.0 bits (92), Expect(2) = 1e-04
 Identities = 17/52 (32%), Positives = 31/52 (58%)
 Frame = -3

Query: 511  LWIQKLLLDLPMEPMEHPKFFVDN*AIISISDHPLFQRKTKHSKIKFYFLRE 356
            +W++K+L  L  E         DN + I +S HP+   K+KH +++F++LR+
Sbjct: 1241 VWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRD 1292

 Score = 26.9 bits (58), Expect(2) = 1e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 321  EYCIAEEQVAEVFIKAFPKVNFE 253
            EYC  E+QVA++F K      FE
Sbjct: 1302 EYCPTEDQVADIFTKPLKLEQFE 1324

>emb|CAD29539.1| polyprotein [Pichia angusta]
          Length = 1417

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = -3

Query: 511  LWIQKLLLDLPMEPMEHPKFFVDN*AIISISDHPLFQRKTKHSKIKFYFLRE 356
            LW+++LL  L ++  E P  + DN   +S+  HP F  +TKH  I+ +F+R+
Sbjct: 1323 LWLKQLLDQLEIKSSEPPTLYCDNTGALSLMKHPAFHPRTKHIDIRHHFIRQ 1374

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,928,214
Number of Sequences: 1393205
Number of extensions: 9373321
Number of successful extensions: 20642
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 19785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20628
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFB024f07_f BP035749 1 417 2 GNf049a04 BP070957 3 408 3 SPD022b10_f BP045710 70 461 4 SPDL037b12_f BP054317 102 597

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