Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008797A_C01 KMC008797A_c01
(412 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198680.1| putative protein; protein id: At5g38640.1, supp... 75 3e-13
ref|NP_181935.1| putative translation initiation factor eIF-2B d... 74 3e-13
ref|NP_011597.1| translation initiation factor eIF2B, 71 kDa (de... 52 2e-06
emb|CAB57261.1| guanine nucleotide exchange factor (long isoform... 45 2e-04
ref|NP_446402.1| eukaryotic translation initiation factor 2B [Ra... 45 2e-04
>ref|NP_198680.1| putative protein; protein id: At5g38640.1, supported by cDNA:
gi_17064893 [Arabidopsis thaliana]
gi|10176832|dbj|BAB10154.1| contains similarity to
guanine nucleotide exchange factor~gene_id:MBB18.19
[Arabidopsis thaliana] gi|17064894|gb|AAL32601.1|
Unknown protein [Arabidopsis thaliana]
Length = 642
Score = 74.7 bits (182), Expect = 3e-13
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = -3
Query: 410 NLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGKEQVWI 288
NL+YDATPSDY+SMI+TDYGMVPPTSVPVIVREY KE + +
Sbjct: 602 NLMYDATPSDYISMIITDYGMVPPTSVPVIVREYQKEHLLV 642
>ref|NP_181935.1| putative translation initiation factor eIF-2B delta subunit;
protein id: At2g44070.1, supported by cDNA: gi_18491238
[Arabidopsis thaliana] gi|7447873|pir||T00687
hypothetical protein At2g44070 [imported] - Arabidopsis
thaliana gi|3212863|gb|AAC23414.1| putative translation
initiation factor eIF-2B delta subunit [Arabidopsis
thaliana] gi|18491239|gb|AAL69444.1| At2g44070/F6E13.20
[Arabidopsis thaliana]
Length = 307
Score = 74.3 bits (181), Expect = 3e-13
Identities = 33/39 (84%), Positives = 37/39 (94%)
Frame = -3
Query: 410 NLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGKEQV 294
NL+YDATPSDY+SMI+TDYGMVPPTSVPVIVREY KE +
Sbjct: 261 NLMYDATPSDYISMIITDYGMVPPTSVPVIVREYQKEHL 299
>ref|NP_011597.1| translation initiation factor eIF2B, 71 kDa (delta) subunit;
translational repressor of GCN4 protein; Gcd2p
[Saccharomyces cerevisiae]
gi|121058|sp|P12754|E2BD_YEAST Translation initiation
factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange
factor) (Guanine nucleotide exchange factor subunit
GCD2) (GCD complex subunit GCD2) gi|73255|pir||RGBYD2
translation regulator GCD2 - yeast (Saccharomyces
cerevisiae) gi|3734|emb|CAA33693.1| GCD2 gene product
(AA 1 - 651) [Saccharomyces cerevisiae]
gi|1323119|emb|CAA97085.1| ORF YGR083c [Saccharomyces
cerevisiae]
Length = 651
Score = 51.6 bits (122), Expect = 2e-06
Identities = 18/34 (52%), Positives = 29/34 (84%)
Frame = -3
Query: 410 NLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREY 309
N++YD TP +Y+ ++T++G +PP+SVPVI+REY
Sbjct: 614 NILYDLTPPEYIKKVITEFGALPPSSVPVILREY 647
>emb|CAB57261.1| guanine nucleotide exchange factor (long isoform) [Homo sapiens]
Length = 543
Score = 45.4 bits (106), Expect = 2e-04
Identities = 17/38 (44%), Positives = 28/38 (72%)
Frame = -3
Query: 410 NLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGKEQ 297
NL+YD TP + V +++T+ GM+P +SVPV++R +Q
Sbjct: 506 NLVYDVTPPELVDLVITELGMIPCSSVPVVLRVKSSDQ 543
>ref|NP_446402.1| eukaryotic translation initiation factor 2B [Rattus norvegicus]
gi|2494308|sp|Q63186|E2BD_RAT TRANSLATION INITIATION
FACTOR EIF-2B DELTA SUBUNIT (EIF-2B GDP-GTP EXCHANGE
FACTOR) gi|7514109|pir||S71961 translation initiation
factor eIF-2B delta chain - rat
gi|667056|emb|CAA88256.1| protein synthesis initiation
factor eIF-2B delta subunit [Rattus norvegicus]
Length = 524
Score = 45.4 bits (106), Expect = 2e-04
Identities = 17/38 (44%), Positives = 28/38 (72%)
Frame = -3
Query: 410 NLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGKEQ 297
NL+YD TP + V +++T+ GM+P +SVPV++R +Q
Sbjct: 487 NLVYDVTPPELVDLVITELGMIPCSSVPVVLRVKSSDQ 524
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,551,773
Number of Sequences: 1393205
Number of extensions: 7313666
Number of successful extensions: 15144
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 14824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15142
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
