Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008789A_C01 KMC008789A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174118.1| nuclear transport factor 2, putative; protein i... 207 9e-53
gb|AAM63803.1| nuclear transport factor 2, putative [Arabidopsis... 207 1e-52
ref|NP_174051.1| putative nuclear transport factor; protein id: ... 204 9e-52
sp|Q9XJ54|NTF2_ORYSA Nuclear transport factor 2 (NTF-2) gi|53602... 161 5e-39
dbj|BAB90110.1| putative Nuclear transport factor 2 [Oryza sativ... 155 5e-37
>ref|NP_174118.1| nuclear transport factor 2, putative; protein id: At1g27970.1,
supported by cDNA: 27366. [Arabidopsis thaliana]
gi|15214148|sp|Q9C7F5|NTF2_ARATH Nuclear transport
factor 2 (NTF-2) gi|25310683|pir||B86405 probable
nuclear transport factor 2 [imported] - Arabidopsis
thaliana gi|12323001|gb|AAG51491.1|AC069471_22 nuclear
transport factor 2, putative [Arabidopsis thaliana]
Length = 126
Score = 207 bits (527), Expect = 9e-53
Identities = 100/124 (80%), Positives = 109/124 (87%)
Frame = -2
Query: 592 KMDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQ 413
+MDPDA++KAFVEHYYSTFD+NR LA LYQE SML+FEGQKIQG +IVAKLTSLPFQQ
Sbjct: 3 QMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQ 62
Query: 412 CHDSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFR 233
C I+TVDCQPSG S MLVFVSGNLQLAGE+HAL FSQMFHLMPT QGS+YV NDIFR
Sbjct: 63 CKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFR 122
Query: 232 LNYA 221
LNYA
Sbjct: 123 LNYA 126
>gb|AAM63803.1| nuclear transport factor 2, putative [Arabidopsis thaliana]
Length = 123
Score = 207 bits (526), Expect = 1e-52
Identities = 100/123 (81%), Positives = 108/123 (87%)
Frame = -2
Query: 589 MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 410
MDPDA++KAFVEHYYSTFD+NR LA LYQE SML+FEGQKIQG +IVAKLTSLPFQQC
Sbjct: 1 MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 60
Query: 409 HDSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 230
I+TVDCQPSG S MLVFVSGNLQLAGE+HAL FSQMFHLMPT QGS+YV NDIFRL
Sbjct: 61 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 120
Query: 229 NYA 221
NYA
Sbjct: 121 NYA 123
>ref|NP_174051.1| putative nuclear transport factor; protein id: At1g27310.1,
supported by cDNA: gi_14596202, supported by cDNA:
gi_18377443 [Arabidopsis thaliana]
gi|25310685|pir||H86398 protein F17L21.10 [imported] -
Arabidopsis thaliana
gi|9802547|gb|AAF99749.1|AC004557_28 F17L21.10
[Arabidopsis thaliana] gi|14596203|gb|AAK68829.1|
similar to nuclear transport factor 2 [Arabidopsis
thaliana] gi|18377444|gb|AAL66888.1| similar to nuclear
transport factor 2 [Arabidopsis thaliana]
Length = 122
Score = 204 bits (518), Expect = 9e-52
Identities = 100/123 (81%), Positives = 108/123 (87%)
Frame = -2
Query: 589 MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 410
MDPDA+AKAFVEHYYSTFD+NR L +LYQEGSML+FEGQKIQGS NIVAKLT LPFQQC
Sbjct: 1 MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60
Query: 409 HDSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 230
+ITTVDCQPSG MLVFVSGNLQLAGEQHAL FSQMFHL+ + QG+YYV NDIFRL
Sbjct: 61 KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 119
Query: 229 NYA 221
NYA
Sbjct: 120 NYA 122
>sp|Q9XJ54|NTF2_ORYSA Nuclear transport factor 2 (NTF-2) gi|5360221|dbj|BAA81910.1|
nuclear transport factor 2 (NTF2) [Oryza sativa
(japonica cultivar-group)]
Length = 122
Score = 161 bits (408), Expect = 5e-39
Identities = 78/122 (63%), Positives = 94/122 (76%)
Frame = -2
Query: 589 MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 410
MD DA+AKAFVEHYY TFD+NR AL +LYQ+GSML+FEGQ+ G++ I KL SLPF QC
Sbjct: 1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60
Query: 409 HDSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 230
H I TVDCQPSG MLVFVSG+L+ ++H L FSQMF L+P G++YV ND+FRL
Sbjct: 61 HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 119
Query: 229 NY 224
NY
Sbjct: 120 NY 121
>dbj|BAB90110.1| putative Nuclear transport factor 2 [Oryza sativa (japonica
cultivar-group)]
Length = 146
Score = 155 bits (391), Expect = 5e-37
Identities = 75/120 (62%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Frame = -2
Query: 580 DALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQCHDS 401
D +A+AFVE+YY TFD+NRAALA LY + SMLSFEG + G+ I KL LPF+QC +
Sbjct: 26 DVVARAFVEYYYQTFDTNRAALAALYGQTSMLSFEGHMVAGAEEIGRKLLGLPFEQCRHA 85
Query: 400 ITTVDCQPSGA-TSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRLNY 224
+ TVDCQP+ + +LVFVSGNLQLAGE+H L FSQMF L+P +QGS++V NDIFRLNY
Sbjct: 86 VCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQMFQLVPNEQGSFFVQNDIFRLNY 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,750,374
Number of Sequences: 1393205
Number of extensions: 11760102
Number of successful extensions: 110587
Number of sequences better than 10.0: 512
Number of HSP's better than 10.0 without gapping: 61883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96612
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
