Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008774A_C01 KMC008774A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192741.1| putative protein; protein id: At4g10030.1, supp... 200 1e-50
dbj|BAB90163.1| P0408G07.9 [Oryza sativa (japonica cultivar-group)] 188 3e-47
dbj|BAB63796.1| P0423B08.5 [Oryza sativa (japonica cultivar-grou... 86 3e-16
ref|NP_190825.2| putative protein; protein id: At3g52570.1, supp... 81 1e-14
pir||T08442 hypothetical protein F22O6.50 - Arabidopsis thaliana... 81 1e-14
>ref|NP_192741.1| putative protein; protein id: At4g10030.1, supported by cDNA: 6718.
[Arabidopsis thaliana] gi|7487731|pir||T04007
hypothetical protein T5L19.160 - Arabidopsis thaliana
gi|4539006|emb|CAB39627.1| putative protein [Arabidopsis
thaliana] gi|7267699|emb|CAB78126.1| putative protein
[Arabidopsis thaliana] gi|21594223|gb|AAM65982.1|
unknown [Arabidopsis thaliana]
Length = 380
Score = 200 bits (508), Expect = 1e-50
Identities = 93/111 (83%), Positives = 100/111 (89%)
Frame = -1
Query: 552 RPTGSPGSGFSWVFDLRGIAEMYQSYEEANLWKIVEDVPRGVHVNFLKAERSLHRWALED 373
RPTG S FSW FDL GIAE+YQSYEE NLW VE++PRGVHVNFLKAERSLHRWALED
Sbjct: 270 RPTGPSASSFSWTFDLDGIAELYQSYEETNLWNFVENLPRGVHVNFLKAERSLHRWALED 329
Query: 372 LQRIHAAEEIAAEEGGGVEMHVLEDAGHWVHADNPDGLFRILSSSFQGVKA 220
LQRIHAAEE+A+EEGGGVEMHVLEDAGHWVH DNPDGLFRILSSSFQ ++A
Sbjct: 330 LQRIHAAEELASEEGGGVEMHVLEDAGHWVHTDNPDGLFRILSSSFQVLRA 380
>dbj|BAB90163.1| P0408G07.9 [Oryza sativa (japonica cultivar-group)]
Length = 310
Score = 188 bits (478), Expect = 3e-47
Identities = 87/107 (81%), Positives = 98/107 (91%), Gaps = 1/107 (0%)
Frame = -1
Query: 549 PTGS-PGSGFSWVFDLRGIAEMYQSYEEANLWKIVEDVPRGVHVNFLKAERSLHRWALED 373
P GS S FSW+FDL GI++MY+SYEE NLW IVE+VPRGVH+NFLKAERSLHRWAL+D
Sbjct: 194 PLGSLSSSSFSWIFDLNGISDMYKSYEETNLWGIVENVPRGVHINFLKAERSLHRWALDD 253
Query: 372 LQRIHAAEEIAAEEGGGVEMHVLEDAGHWVHADNPDGLFRILSSSFQ 232
LQRIH AEE+AA+EGGGVEMHVLEDAGHWVHADNPDGLFRILSS+F+
Sbjct: 254 LQRIHTAEELAADEGGGVEMHVLEDAGHWVHADNPDGLFRILSSTFR 300
>dbj|BAB63796.1| P0423B08.5 [Oryza sativa (japonica cultivar-group)]
gi|20521258|dbj|BAB91774.1| P0679C12.26 [Oryza sativa
(japonica cultivar-group)]
Length = 366
Score = 85.9 bits (211), Expect = 3e-16
Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = -1
Query: 522 SWVFDLRGIAEMYQSYEEANLWKIVEDVPRGVHVNFLKAERSLHRWALEDLQRIHAAEEI 343
+W FDL+ +M+ SY E + W ++E+ P+G+ + ++AE S RW +D+QR+ A
Sbjct: 265 TWAFDLQAAIDMFNSYRERSYWTLLENPPKGLDIAIVQAELS-DRWLSDDVQRLKALSRR 323
Query: 342 AAE-EGGGVEMHVLEDAGHWVHADNPDGLFRILSSSF 235
++ + G V +HVL ++GHWVH DNP GL I+ +F
Sbjct: 324 ESKPDAGKVSLHVLPNSGHWVHVDNPKGLLEIMVPNF 360
>ref|NP_190825.2| putative protein; protein id: At3g52570.1, supported by cDNA:
gi_18377852, supported by cDNA: gi_20453340 [Arabidopsis
thaliana] gi|18377853|gb|AAL67113.1| AT3g52570/F22O6_50
[Arabidopsis thaliana] gi|20453341|gb|AAM19909.1|
AT3g52570/F22O6_50 [Arabidopsis thaliana]
Length = 335
Score = 80.9 bits (198), Expect = 1e-14
Identities = 38/101 (37%), Positives = 59/101 (57%), Gaps = 1/101 (0%)
Frame = -1
Query: 534 GSGFSWVFDLRGIAEMYQSYEEANLWKIVEDVPRGVHVNFLKAERSLHRWALEDLQRIHA 355
G +W F+L G +M+ SY E + W ++E+ P+ +NF+ AE+S RW + +R+
Sbjct: 231 GDSETWTFNLDGAVQMFNSYRETSYWSLLENPPKETEINFVIAEKS-DRWDNDTTKRLET 289
Query: 354 -AEEIAAEEGGGVEMHVLEDAGHWVHADNPDGLFRILSSSF 235
A + G V H+L ++GHWVH DNP GL I+S +F
Sbjct: 290 IANQRQNVAEGKVATHLLRNSGHWVHTDNPKGLLEIVSPNF 330
>pir||T08442 hypothetical protein F22O6.50 - Arabidopsis thaliana
gi|4886270|emb|CAB43409.1| putative protein [Arabidopsis
thaliana]
Length = 343
Score = 80.9 bits (198), Expect = 1e-14
Identities = 38/101 (37%), Positives = 59/101 (57%), Gaps = 1/101 (0%)
Frame = -1
Query: 534 GSGFSWVFDLRGIAEMYQSYEEANLWKIVEDVPRGVHVNFLKAERSLHRWALEDLQRIHA 355
G +W F+L G +M+ SY E + W ++E+ P+ +NF+ AE+S RW + +R+
Sbjct: 239 GDSETWTFNLDGAVQMFNSYRETSYWSLLENPPKETEINFVIAEKS-DRWDNDTTKRLET 297
Query: 354 -AEEIAAEEGGGVEMHVLEDAGHWVHADNPDGLFRILSSSF 235
A + G V H+L ++GHWVH DNP GL I+S +F
Sbjct: 298 IANQRQNVAEGKVATHLLRNSGHWVHTDNPKGLLEIVSPNF 338
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,922,017
Number of Sequences: 1393205
Number of extensions: 10062809
Number of successful extensions: 31264
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 28865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31143
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
