Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008753A_C01 KMC008753A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186883.1| RING zinc-finger protein, putative; protein id:... 88 6e-17
dbj|BAA77204.1| ring finger protein [Cicer arietinum] 87 1e-16
ref|NP_197086.1| putative protein; protein id: At5g15820.1, supp... 87 1e-16
pir||T50499 hypothetical protein T22D6.80 - Arabidopsis thaliana... 87 1e-16
ref|NP_568188.1| Expressed protein; protein id: At5g08140.1, sup... 87 1e-16
>ref|NP_186883.1| RING zinc-finger protein, putative; protein id: At3g02340.1
[Arabidopsis thaliana]
gi|10092183|gb|AAG12602.1|AC068900_8 RING zinc-finger
protein, putative; 7563-8792 [Arabidopsis thaliana]
Length = 409
Score = 88.2 bits (217), Expect = 6e-17
Identities = 35/51 (68%), Positives = 43/51 (83%)
Frame = -3
Query: 528 DDFVVGEEVKPLPCSHRYPGDCIVPWLGIRNTCPVCRYEFPTDDADYERRR 376
D+ +V E+V+ LPCSH Y G+CI+PWLGIRNTCPVCRYE PTDD +YER +
Sbjct: 340 DEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDDLEYERHK 390
>dbj|BAA77204.1| ring finger protein [Cicer arietinum]
Length = 131
Score = 87.0 bits (214), Expect = 1e-16
Identities = 35/51 (68%), Positives = 43/51 (83%)
Frame = -3
Query: 528 DDFVVGEEVKPLPCSHRYPGDCIVPWLGIRNTCPVCRYEFPTDDADYERRR 376
D+ ++ E+V+ LPCSH Y GDCI+PWL IRNTCPVCR+E PTDDADYER +
Sbjct: 81 DEVMLEEKVRKLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDADYERSK 131
>ref|NP_197086.1| putative protein; protein id: At5g15820.1, supported by cDNA:
gi_16323124 [Arabidopsis thaliana]
gi|11357424|pir||T51411 hypothetical protein F14F8_200 -
Arabidopsis thaliana gi|9755627|emb|CAC01781.1| putative
protein [Arabidopsis thaliana]
gi|16323125|gb|AAL15297.1| AT5g15820/F14F8_200
[Arabidopsis thaliana] gi|21360417|gb|AAM47324.1|
AT5g15820/F14F8_200 [Arabidopsis thaliana]
Length = 348
Score = 87.0 bits (214), Expect = 1e-16
Identities = 35/51 (68%), Positives = 42/51 (81%)
Frame = -3
Query: 528 DDFVVGEEVKPLPCSHRYPGDCIVPWLGIRNTCPVCRYEFPTDDADYERRR 376
D+ V E+VK LPC H Y G+CI+PWLGIRNTCPVCR+E PTDD +YER+R
Sbjct: 296 DEVVFKEKVKRLPCKHYYHGECIIPWLGIRNTCPVCRHELPTDDLEYERKR 346
>pir||T50499 hypothetical protein T22D6.80 - Arabidopsis thaliana
gi|8346551|emb|CAB93715.1| putative protein [Arabidopsis
thaliana]
Length = 530
Score = 87.0 bits (214), Expect = 1e-16
Identities = 33/58 (56%), Positives = 45/58 (76%)
Frame = -3
Query: 528 DDFVVGEEVKPLPCSHRYPGDCIVPWLGIRNTCPVCRYEFPTDDADYERRRVQRSAQS 355
D+ +G + LPC+H+Y +CIVPWL +RNTCPVCRYE PTDDA+YE+R+ QR+ +
Sbjct: 314 DEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRYELPTDDAEYEQRKTQRTTNT 371
>ref|NP_568188.1| Expressed protein; protein id: At5g08140.1, supported by cDNA:
gi_16648692 [Arabidopsis thaliana]
gi|26450393|dbj|BAC42311.1| unknown protein [Arabidopsis
thaliana]
Length = 376
Score = 87.0 bits (214), Expect = 1e-16
Identities = 33/58 (56%), Positives = 45/58 (76%)
Frame = -3
Query: 528 DDFVVGEEVKPLPCSHRYPGDCIVPWLGIRNTCPVCRYEFPTDDADYERRRVQRSAQS 355
D+ +G + LPC+H+Y +CIVPWL +RNTCPVCRYE PTDDA+YE+R+ QR+ +
Sbjct: 314 DEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRYELPTDDAEYEQRKTQRTTNT 371
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,296,114
Number of Sequences: 1393205
Number of extensions: 10256360
Number of successful extensions: 200940
Number of sequences better than 10.0: 2914
Number of HSP's better than 10.0 without gapping: 52881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116237
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
