Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008745A_C01 KMC008745A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563946.1| RRM-containing protein; protein id: At1g14340.1... 177 2e-43
gb|AAM67095.1| unknown [Arabidopsis thaliana] 176 2e-43
pir||G86277 F14L17.11 protein - Arabidopsis thaliana gi|7262676|... 165 7e-40
ref|NP_186770.1| RRM-containing protein; protein id: At3g01210.1... 137 1e-31
dbj|BAC43177.1| unknown protein [Arabidopsis thaliana] gi|283729... 137 1e-31
>ref|NP_563946.1| RRM-containing protein; protein id: At1g14340.1, supported by cDNA:
9495., supported by cDNA: gi_15292970, supported by
cDNA: gi_20259676 [Arabidopsis thaliana]
gi|15292971|gb|AAK93596.1| unknown protein [Arabidopsis
thaliana] gi|20259677|gb|AAM14356.1| unknown protein
[Arabidopsis thaliana]
Length = 244
Score = 177 bits (448), Expect = 2e-43
Identities = 92/148 (62%), Positives = 116/148 (78%)
Frame = -2
Query: 692 EERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATAT 513
E+ + + ++ + +AGEAVT AQEVVK MLA G+VL KDAL+KAK FDESH VSA A
Sbjct: 97 EDESDSQHYAQRSEFNAGEAVTKAQEVVKIMLATGFVLGKDALSKAKAFDESHGVSAAAV 156
Query: 512 AKVSELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTKAAASATGRSVASAASTVVNSSYF 333
A+VS+L +RIGL++KI G+EAV+ DQ Y+VS T K+A ATGR+ A+AA++VVNSSYF
Sbjct: 157 ARVSQLEQRIGLTDKIFTGLEAVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYF 216
Query: 332 SKGALWVSGALTRAAQVTSDLGTRGGRQ 249
S GALW+SGAL RAA+ SDLGTRG RQ
Sbjct: 217 SSGALWLSGALERAAKAASDLGTRGSRQ 244
>gb|AAM67095.1| unknown [Arabidopsis thaliana]
Length = 244
Score = 176 bits (447), Expect = 2e-43
Identities = 92/148 (62%), Positives = 116/148 (78%)
Frame = -2
Query: 692 EERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATAT 513
E+ + + ++ + +AGEAVT AQEVVK MLA G+VL KDAL+KAK FDESH VSA A
Sbjct: 97 EDESDSHHYAQRSEFNAGEAVTKAQEVVKIMLATGFVLGKDALSKAKAFDESHGVSAAAV 156
Query: 512 AKVSELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTKAAASATGRSVASAASTVVNSSYF 333
A+VS+L +RIGL++KI G+EAV+ DQ Y+VS T K+A ATGR+ A+AA++VVNSSYF
Sbjct: 157 ARVSQLEQRIGLTDKIFTGLEAVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYF 216
Query: 332 SKGALWVSGALTRAAQVTSDLGTRGGRQ 249
S GALW+SGAL RAA+ SDLGTRG RQ
Sbjct: 217 SSGALWLSGALERAAKAASDLGTRGSRQ 244
>pir||G86277 F14L17.11 protein - Arabidopsis thaliana
gi|7262676|gb|AAF43934.1|AC012188_11 Contains similarity
to Vip1 protein from Schizosaccharomyces pombe
gb|Y13635.1 and contains a RNA recognition motif
PF|00076. EST gb|AI996906 comes from this gene.
[Arabidopsis thaliana]
Length = 431
Score = 165 bits (417), Expect = 7e-40
Identities = 86/143 (60%), Positives = 111/143 (77%)
Frame = -2
Query: 692 EERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATAT 513
E+ + + ++ + +AGEAVT AQEVVK MLA G+VL KDAL+KAK FDESH VSA A
Sbjct: 97 EDESDSQHYAQRSEFNAGEAVTKAQEVVKIMLATGFVLGKDALSKAKAFDESHGVSAAAV 156
Query: 512 AKVSELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTKAAASATGRSVASAASTVVNSSYF 333
A+VS+L +RIGL++KI G+EAV+ DQ Y+VS T K+A ATGR+ A+AA++VVNSSYF
Sbjct: 157 ARVSQLEQRIGLTDKIFTGLEAVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYF 216
Query: 332 SKGALWVSGALTRAAQVTSDLGT 264
S GALW+SGAL RAA+ SDL +
Sbjct: 217 SSGALWLSGALERAAKAASDLAS 239
>ref|NP_186770.1| RRM-containing protein; protein id: At3g01210.1 [Arabidopsis
thaliana] gi|6714467|gb|AAF26153.1|AC008261_10 unknown
protein [Arabidopsis thaliana]
Length = 249
Score = 137 bits (345), Expect = 1e-31
Identities = 75/157 (47%), Positives = 104/157 (65%), Gaps = 11/157 (7%)
Frame = -2
Query: 695 EEERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATA 516
EE+ + T S+ F SS GEA+TVAQ+VV+TMLAKGYVLSKDA+ KAK DES + S+
Sbjct: 91 EEDYSVTVTRSDAFASSPGEAITVAQQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLV 150
Query: 515 TAKVSELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTK-----------AAASATGRSVA 369
K++E+S +GL++ I + +E V+ D+ Y+ S TK AAA+ TG+ A
Sbjct: 151 ATKLAEISHYLGLTQNIQSSMELVRSADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAA 210
Query: 368 SAASTVVNSSYFSKGALWVSGALTRAAQVTSDLGTRG 258
+AA++VVNS YF+ GALW S AL RAA+ + +G G
Sbjct: 211 AAATSVVNSRYFANGALWFSDALGRAAKAAAHIGGGG 247
>dbj|BAC43177.1| unknown protein [Arabidopsis thaliana] gi|28372926|gb|AAO39945.1|
At3g01210 [Arabidopsis thaliana]
Length = 191
Score = 137 bits (345), Expect = 1e-31
Identities = 75/157 (47%), Positives = 104/157 (65%), Gaps = 11/157 (7%)
Frame = -2
Query: 695 EEERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATA 516
EE+ + T S+ F SS GEA+TVAQ+VV+TMLAKGYVLSKDA+ KAK DES + S+
Sbjct: 33 EEDYSVTVTRSDAFASSPGEAITVAQQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLV 92
Query: 515 TAKVSELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTK-----------AAASATGRSVA 369
K++E+S +GL++ I + +E V+ D+ Y+ S TK AAA+ TG+ A
Sbjct: 93 ATKLAEISHYLGLTQNIQSSMELVRSADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAA 152
Query: 368 SAASTVVNSSYFSKGALWVSGALTRAAQVTSDLGTRG 258
+AA++VVNS YF+ GALW S AL RAA+ + +G G
Sbjct: 153 AAATSVVNSRYFANGALWFSDALGRAAKAAAHIGGGG 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,680,959
Number of Sequences: 1393205
Number of extensions: 11020644
Number of successful extensions: 26431
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 25053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26022
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
