Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008737A_C01 KMC008737A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG49030.1|AF204783_1 ripening regulated protein DDTFR8 [Lyco... 167 9e-41
gb|AAM83226.1| AT4g02450/T14P8_5 [Arabidopsis thaliana] gi|23308... 165 3e-40
emb|CAC16575.1| p23 co-chaperone [Arabidopsis thaliana] 165 3e-40
ref|NP_192154.1| putative protein; protein id: At4g02450.1 [Arab... 163 1e-39
gb|AAG41763.1|AF153128_1 p23 [Brassica napus] 160 6e-39
>gb|AAG49030.1|AF204783_1 ripening regulated protein DDTFR8 [Lycopersicon esculentum]
Length = 179
Score = 167 bits (422), Expect = 9e-41
Identities = 79/130 (60%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
Frame = +3
Query: 111 SRHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKV 290
SRHP +KWAQ DK++ITV+LPD+K+ K+ L P+G F F+A+AGA + PYEV L+LFDK+
Sbjct: 2 SRHPTIKWAQMSDKLFITVELPDAKNVKLKLEPEGKFLFSATAGADNVPYEVDLDLFDKI 61
Query: 291 NVEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHYVKVDWDKWVDEDEEDVVAEPD 470
NV+ESK + RSI +V+KAE WW RL++ EG P ++KVDWDKWVDEDEED EPD
Sbjct: 62 NVDESKSSTTSRSIVYLVKKAEDKWWSRLVKQEGLRPVFLKVDWDKWVDEDEEDSKPEPD 121
Query: 471 M--GGMDFSK 494
M G MDFSK
Sbjct: 122 MDFGDMDFSK 131
>gb|AAM83226.1| AT4g02450/T14P8_5 [Arabidopsis thaliana] gi|23308253|gb|AAN18096.1|
At4g02450/T14P8_5 [Arabidopsis thaliana]
Length = 241
Score = 165 bits (417), Expect = 3e-40
Identities = 80/133 (60%), Positives = 97/133 (72%)
Frame = +3
Query: 111 SRHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKV 290
SRHPEVKWA+ +K+++TV L D+KD KV+L P+GVF F+A G + YE+KLEL DKV
Sbjct: 2 SRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKV 61
Query: 291 NVEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHYVKVDWDKWVDEDEEDVVAEPD 470
NVEESKINIG RSIF +++KAE W +LLR + KPPHYVKVDWDKWVDED+E D
Sbjct: 62 NVEESKINIGERSIFCIIEKAEPERWNKLLRVK-KPPHYVKVDWDKWVDEDDEGSAGAAD 120
Query: 471 MGGMDFSKFGGMG 509
M GGMG
Sbjct: 121 MDMAGMEGMGGMG 133
>emb|CAC16575.1| p23 co-chaperone [Arabidopsis thaliana]
Length = 241
Score = 165 bits (417), Expect = 3e-40
Identities = 80/133 (60%), Positives = 97/133 (72%)
Frame = +3
Query: 111 SRHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKV 290
SRHPEVKWA+ +K+++TV L D+KD KV+L P+GVF F+A G + YE+KLEL DKV
Sbjct: 2 SRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKV 61
Query: 291 NVEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHYVKVDWDKWVDEDEEDVVAEPD 470
NVEESKINIG RSIF +++KAE W +LLR + KPPHYVKVDWDKWVDED+E D
Sbjct: 62 NVEESKINIGERSIFCIIEKAEPERWNKLLRVK-KPPHYVKVDWDKWVDEDDEGSAGAAD 120
Query: 471 MGGMDFSKFGGMG 509
M GGMG
Sbjct: 121 MDMAGMEGMGGMG 133
>ref|NP_192154.1| putative protein; protein id: At4g02450.1 [Arabidopsis thaliana]
gi|7487014|pir||T01305 hypothetical protein T14P8.5 -
Arabidopsis thaliana gi|3193303|gb|AAC19287.1| similar
to several proteins containing a tandem repeat region
such as Plasmodium falciparum GGM tandem repeat protein
(GB:U27807); partial CDS [Arabidopsis thaliana]
gi|7269005|emb|CAB80738.1| putative protein [Arabidopsis
thaliana]
Length = 262
Score = 163 bits (413), Expect = 1e-39
Identities = 79/132 (59%), Positives = 96/132 (71%)
Frame = +3
Query: 114 RHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKVN 293
RHPEVKWA+ +K+++TV L D+KD KV+L P+GVF F+A G + YE+KLEL DKVN
Sbjct: 7 RHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVN 66
Query: 294 VEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHYVKVDWDKWVDEDEEDVVAEPDM 473
VEESKINIG RSIF +++KAE W +LLR + KPPHYVKVDWDKWVDED+E DM
Sbjct: 67 VEESKINIGERSIFCIIEKAEPERWNKLLRVK-KPPHYVKVDWDKWVDEDDEGSAGAADM 125
Query: 474 GGMDFSKFGGMG 509
GGMG
Sbjct: 126 DMAGMEGMGGMG 137
>gb|AAG41763.1|AF153128_1 p23 [Brassica napus]
Length = 178
Score = 160 bits (406), Expect = 6e-39
Identities = 78/134 (58%), Positives = 97/134 (72%)
Frame = +3
Query: 111 SRHPEVKWAQREDKVYITVQLPDSKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKV 290
SRHP VKWAQR D VYITV+LPD++D K+ L P+G F F+A++GA YEV L+L D V
Sbjct: 2 SRHPTVKWAQRSDWVYITVELPDAEDVKLKLEPEGKFFFSATSGASKTLYEVDLDLLDSV 61
Query: 291 NVEESKINIGVRSIFSVVQKAESGWWKRLLRGEGKPPHYVKVDWDKWVDEDEEDVVAEPD 470
+V ESK ++ RS+F +V+KAES WW RL + EGK P Y+KVDWDKWVDED+ED E D
Sbjct: 62 DVNESKASVSSRSVFYLVKKAESKWWNRLTKPEGKHPLYLKVDWDKWVDEDDEDKGGEGD 121
Query: 471 MGGMDFSKFGGMGM 512
M DF F G+ M
Sbjct: 122 MDFGDFD-FNGLNM 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,370,055
Number of Sequences: 1393205
Number of extensions: 11678155
Number of successful extensions: 67294
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 44984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61141
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
