Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008721A_C01 KMC008721A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564358.1| expressed protein; protein id: At1g30540.1, sup... 80 2e-14
pir||E86430 protein F26G16.16 [imported] - Arabidopsis thaliana ... 80 2e-14
ref|NP_193106.1| putative protein; protein id: At4g13700.1 [Arab... 34 1.3
sp|Q33756|NU1M_ARBLI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 gi|1... 32 3.6
dbj|BAB60628.1| unknown product [Thermoplasma volcanium] 32 6.2
>ref|NP_564358.1| expressed protein; protein id: At1g30540.1, supported by cDNA:
103989. [Arabidopsis thaliana]
gi|21536578|gb|AAM60910.1| unknown [Arabidopsis
thaliana]
Length = 351
Score = 79.7 bits (195), Expect = 2e-14
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = -2
Query: 533 DGNDDFPLLMVGGVLEANRRWDIGKEVVDCISKYFPGVLPIRPKVEPAVGAAWLAWSF 360
DG FP++MVGGVL AN++WDIGKEV I++YFPG I PKVEPAVGAA LA +F
Sbjct: 291 DGTASFPVVMVGGVLNANQKWDIGKEVSKRINRYFPGAQTIIPKVEPAVGAALLAMNF 348
>pir||E86430 protein F26G16.16 [imported] - Arabidopsis thaliana
gi|6634777|gb|AAF19757.1|AC009917_16 F26G16.16
[Arabidopsis thaliana]
Length = 352
Score = 79.7 bits (195), Expect = 2e-14
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = -2
Query: 533 DGNDDFPLLMVGGVLEANRRWDIGKEVVDCISKYFPGVLPIRPKVEPAVGAAWLAWSF 360
DG FP++MVGGVL AN++WDIGKEV I++YFPG I PKVEPAVGAA LA +F
Sbjct: 292 DGTASFPVVMVGGVLNANQKWDIGKEVSKRINRYFPGAQTIIPKVEPAVGAALLAMNF 349
>ref|NP_193106.1| putative protein; protein id: At4g13700.1 [Arabidopsis thaliana]
gi|7435105|pir||T05239 acid phosphatase (EC 3.1.3.2)
purple F18A5.90, precursor [similarity] - Arabidopsis
thaliana gi|4455299|emb|CAB36834.1| putative protein
[Arabidopsis thaliana] gi|7268074|emb|CAB78412.1|
putative protein [Arabidopsis thaliana]
Length = 474
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = -2
Query: 527 NDDFPLLMVGGVLEANRRWDIGKEVVDCISKYFPGVLPIRPKVEPAVGAAWLAWSFFMK 351
ND +++VG + AN+ IG + V C S FP PIR +P W AW FM+
Sbjct: 217 NDPSLVIIVGDLTYANQYRTIGGKGVPCFSCSFPDA-PIRETYQP----RWDAWGRFME 270
>sp|Q33756|NU1M_ARBLI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 gi|1280185|gb|AAA99052.1|
ND1 gene product
Length = 125
Score = 32.3 bits (72), Expect = 3.6
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 231 KLHNAETVKP*SELAMPYSFFVQSIIYIILAYGLW*AL-VTPPLL 100
KL ETVKP S A PY FF ++++ LA LW + VT P L
Sbjct: 59 KLFIKETVKPSS--ASPYLFFASPVLFLTLALLLWNFMPVTSPAL 101
>dbj|BAB60628.1| unknown product [Thermoplasma volcanium]
Length = 179
Score = 31.6 bits (70), Expect = 6.2
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +1
Query: 148 NINYGLYKKTIWHSKFTLWLHSFSIM*FTLSVTKN*EK*LSLFVYFMIFFLLF 306
N+ L K+T ++ KF++ L ++++ L V E L LF+ F++++LLF
Sbjct: 106 NVRIRLLKETYYNVKFSVLLCIYALIAIILYVLLPKELYLDLFLGFIVYYLLF 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,097,496
Number of Sequences: 1393205
Number of extensions: 9692197
Number of successful extensions: 20956
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20950
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
