Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008680A_C01 KMC008680A_c01
(394 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA63894.1| aspartate aminotransferase [Lotus japonicus] 155 1e-37
pir||T06136 aspartate transaminase (EC 2.6.1.1) AAT1 peroxisomal... 154 3e-37
ref|NP_196713.1| aspartate aminotransferase (Asp3); protein id: ... 139 9e-33
sp|P28011|AAT1_MEDSA Aspartate aminotransferase 1 (Transaminase ... 132 8e-31
emb|CAA43779.1| aspartate aminotransferase [Medicago sativa] 129 1e-29
>emb|CAA63894.1| aspartate aminotransferase [Lotus japonicus]
Length = 418
Score = 155 bits (392), Expect = 1e-37
Identities = 77/77 (100%), Positives = 77/77 (100%)
Frame = +1
Query: 163 MDSQNISPSPTASSGSVFAHLVRAPEDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPL 342
MDSQNISPSPTASSGSVFAHLVRAPEDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPL
Sbjct: 1 MDSQNISPSPTASSGSVFAHLVRAPEDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPL 60
Query: 343 VLNVVRKAQHQIVNDPS 393
VLNVVRKAQHQIVNDPS
Sbjct: 61 VLNVVRKAQHQIVNDPS 77
>pir||T06136 aspartate transaminase (EC 2.6.1.1) AAT1 peroxisomal/ glyoxysomal
precursor - soybean gi|2654094|gb|AAC50014.1| aspartate
aminotransferase glyoxysomal isozyme AAT1 precursor
[Glycine max]
Length = 456
Score = 154 bits (389), Expect = 3e-37
Identities = 84/117 (71%), Positives = 96/117 (81%), Gaps = 4/117 (3%)
Frame = +1
Query: 55 MRPPVLLETTSF---SSSSSSPSDRRLNVLAGHLVHNDQMDSQN-ISPSPTASSGSVFAH 222
MRPPV+L+TT+ SSSSS P DRRLN LA H + QM S + IS SPT++S SVF H
Sbjct: 1 MRPPVILKTTTSLLDSSSSSPPCDRRLNTLARHFL--PQMASHDSISASPTSASDSVFNH 58
Query: 223 LVRAPEDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAQHQIVNDPS 393
LVRAPEDPILGVTVA+NKDPSPVKLNLGVGAYRTEEGKPLVLNVVR+ + Q++ND S
Sbjct: 59 LVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVS 115
>ref|NP_196713.1| aspartate aminotransferase (Asp3); protein id: At5g11520.1,
supported by cDNA: gi_15292662, supported by cDNA:
gi_19310620, supported by cDNA: gi_693691 [Arabidopsis
thaliana] gi|1168258|sp|P46644|AAT3_ARATH Aspartate
aminotransferase, chloroplast precursor (Transaminase A)
gi|11258882|pir||T48511 aspartate transaminase (EC
2.6.1.1) Asp3 F15N18.110 [similarity] - Arabidopsis
thaliana gi|693692|gb|AAA79371.1| aspartate
aminotransferase gi|7573409|emb|CAB87712.1| aspartate
aminotransferase (Asp3) [Arabidopsis thaliana]
gi|15292663|gb|AAK92700.1| putative aspartate
aminotransferase Asp3 [Arabidopsis thaliana]
gi|19310621|gb|AAL85041.1| putative aspartate
aminotransferase ASP3 [Arabidopsis thaliana]
Length = 449
Score = 139 bits (350), Expect = 9e-33
Identities = 77/110 (70%), Positives = 89/110 (80%), Gaps = 5/110 (4%)
Frame = +1
Query: 73 LETTSFSSSSSSPSDRRLNVLAGHLVHNDQMDSQNISP---SPTA--SSGSVFAHLVRAP 237
++TT FSSSSSS DRR+ L HL N DS N+S SPT+ + GSVF+HLV+AP
Sbjct: 1 MKTTHFSSSSSS--DRRIGALLRHL--NSGSDSDNLSSLYASPTSGGTGGSVFSHLVQAP 56
Query: 238 EDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAQHQIVND 387
EDPILGVTVA+NKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKA+ Q++ND
Sbjct: 57 EDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106
>sp|P28011|AAT1_MEDSA Aspartate aminotransferase 1 (Transaminase A)
gi|1076499|pir||S46315 aspartate transaminase (EC
2.6.1.1) - alfalfa gi|777386|gb|AAB46610.1| aspartate
aminotransferase [Medicago sativa]
Length = 418
Score = 132 bits (333), Expect = 8e-31
Identities = 64/77 (83%), Positives = 72/77 (93%)
Frame = +1
Query: 163 MDSQNISPSPTASSGSVFAHLVRAPEDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPL 342
M SQNI+PSPTASS SVFAHLVRAPEDPILGVTVA+NKDPSP+KLNLGVGAYRTEEGKPL
Sbjct: 1 MASQNITPSPTASSDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPL 60
Query: 343 VLNVVRKAQHQIVNDPS 393
VL+VVR+ + Q++ND S
Sbjct: 61 VLDVVRRVERQLLNDMS 77
>emb|CAA43779.1| aspartate aminotransferase [Medicago sativa]
Length = 417
Score = 129 bits (323), Expect = 1e-29
Identities = 61/74 (82%), Positives = 70/74 (94%)
Frame = +1
Query: 172 QNISPSPTASSGSVFAHLVRAPEDPILGVTVAFNKDPSPVKLNLGVGAYRTEEGKPLVLN 351
+NI+PSPTASS SVFAHLVRAPEDPILGVTVA+NKDPSP+KLNLGVGAYRTEEGKPLVL+
Sbjct: 3 ENITPSPTASSDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLD 62
Query: 352 VVRKAQHQIVNDPS 393
VVR+ + Q++ND S
Sbjct: 63 VVRRVERQLLNDMS 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.313 0.130 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,620,145
Number of Sequences: 1393205
Number of extensions: 7798605
Number of successful extensions: 27687
Number of sequences better than 10.0: 438
Number of HSP's better than 10.0 without gapping: 24363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26949
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
