Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008673A_C01 KMC008673A_c01
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568201.1| Expressed protein; protein id: At5g08565.1, sup... 190 2e-47
ref|NP_568976.1| expressed protein; protein id: At5g63670.1, sup... 190 2e-47
gb|AAM63465.1| unknown [Arabidopsis thaliana] 186 2e-46
dbj|BAC10848.1| contains ESTs AU070793(R10253),AU166054(E30838),... 169 3e-41
emb|CAC84498.1| hypothetical protein [Pinus pinaster] 117 2e-25
>ref|NP_568201.1| Expressed protein; protein id: At5g08565.1, supported by cDNA:
252311. [Arabidopsis thaliana]
Length = 116
Score = 190 bits (482), Expect = 2e-47
Identities = 87/100 (87%), Positives = 92/100 (92%)
Frame = -3
Query: 697 LRACLRCRLVKTYDQFRDSGCENCQFFKMEEDHERIADCTTPNFNGIISVMDPSRSWAAR 518
LRACLRCRLVKTYDQFRDSGCENC FFK+E+DHERI D TTPNFNGIIS+MDP RSWAAR
Sbjct: 16 LRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAAR 75
Query: 517 WLRIGKFAPGVYTLAVSEALPEEMQAICEEERVQYAPPKR 398
WLRIGKFAPG YTLAVSEALPEEMQ IC++ RVQY PPKR
Sbjct: 76 WLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115
>ref|NP_568976.1| expressed protein; protein id: At5g63670.1, supported by cDNA:
11054., supported by cDNA: gi_14334975, supported by
cDNA: gi_17104634 [Arabidopsis thaliana]
gi|14334976|gb|AAK59665.1| unknown protein [Arabidopsis
thaliana] gi|17104635|gb|AAL34206.1| unknown protein
[Arabidopsis thaliana] gi|21536759|gb|AAM61091.1|
unknown [Arabidopsis thaliana]
Length = 116
Score = 190 bits (482), Expect = 2e-47
Identities = 88/100 (88%), Positives = 92/100 (92%)
Frame = -3
Query: 697 LRACLRCRLVKTYDQFRDSGCENCQFFKMEEDHERIADCTTPNFNGIISVMDPSRSWAAR 518
LRACLRCRLVKTYDQFRD+GCENC FFKMEEDHERI + TTPNFNGIISVMDPSRSWAAR
Sbjct: 16 LRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAAR 75
Query: 517 WLRIGKFAPGVYTLAVSEALPEEMQAICEEERVQYAPPKR 398
WLRIGKFAPG YTLAVSE LPEEMQ +C+EERVQY PKR
Sbjct: 76 WLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115
>gb|AAM63465.1| unknown [Arabidopsis thaliana]
Length = 116
Score = 186 bits (473), Expect = 2e-46
Identities = 85/100 (85%), Positives = 91/100 (91%)
Frame = -3
Query: 697 LRACLRCRLVKTYDQFRDSGCENCQFFKMEEDHERIADCTTPNFNGIISVMDPSRSWAAR 518
LRACLRCRLVKTYDQFRDSGCENC FFK+E+DHERI D TTPNF+GIIS+MDP RSWAAR
Sbjct: 16 LRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFDGIISMMDPRRSWAAR 75
Query: 517 WLRIGKFAPGVYTLAVSEALPEEMQAICEEERVQYAPPKR 398
WLRIGKFAPG YTLAVSE LPEEMQ IC++ RVQY PPKR
Sbjct: 76 WLRIGKFAPGCYTLAVSETLPEEMQFICQQARVQYVPPKR 115
>dbj|BAC10848.1| contains ESTs
AU070793(R10253),AU166054(E30838),C74301(E30838)~similar
to Arabidopsis thaliana chromosome5,At5g08565~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 131
Score = 169 bits (429), Expect = 3e-41
Identities = 74/100 (74%), Positives = 83/100 (83%)
Frame = -3
Query: 697 LRACLRCRLVKTYDQFRDSGCENCQFFKMEEDHERIADCTTPNFNGIISVMDPSRSWAAR 518
LRACLRCRLVKTYDQF + GCENC F ME DH+ + +CTTPNF GIISVMDP RSWAAR
Sbjct: 31 LRACLRCRLVKTYDQFMEQGCENCPFLDMERDHDNVVNCTTPNFTGIISVMDPGRSWAAR 90
Query: 517 WLRIGKFAPGVYTLAVSEALPEEMQAICEEERVQYAPPKR 398
WLRIGKF PG YTLAV+E LPEE Q++C++ VQY PPKR
Sbjct: 91 WLRIGKFIPGCYTLAVAEELPEEYQSVCQDNNVQYFPPKR 130
>emb|CAC84498.1| hypothetical protein [Pinus pinaster]
Length = 73
Score = 117 bits (292), Expect = 2e-25
Identities = 50/71 (70%), Positives = 60/71 (84%)
Frame = -3
Query: 613 MEEDHERIADCTTPNFNGIISVMDPSRSWAARWLRIGKFAPGVYTLAVSEALPEEMQAIC 434
M++DH+R+ DCTT +F+GIIS MDP+RSWAARWLRI +F PG YTLAVSEAL EEMQA+C
Sbjct: 1 MDQDHDRVVDCTTSSFSGIISCMDPTRSWAARWLRISRFVPGCYTLAVSEALSEEMQAVC 60
Query: 433 EEERVQYAPPK 401
E+ QY PPK
Sbjct: 61 EDNNAQYVPPK 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,926,238
Number of Sequences: 1393205
Number of extensions: 12259942
Number of successful extensions: 26622
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26609
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
