Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008671A_C01 KMC008671A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197993.1| nucleic acid binding protein - like; protein id... 134 8e-31
pir||T01840 hypothetical protein F9D12.13 - Arabidopsis thaliana... 134 8e-31
ref|NP_189865.1| nucleic acid binding protein-like; protein id: ... 131 4e-30
ref|NP_197551.1| zinc finger protein - like; protein id: At5g205... 127 7e-29
gb|AAK55785.1|AC079038_19 Putative nucleic acid binding protein ... 119 3e-26
>ref|NP_197993.1| nucleic acid binding protein - like; protein id: At5g26210.1,
supported by cDNA: 32443. [Arabidopsis thaliana]
gi|21592780|gb|AAM64729.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 255
Score = 134 bits (336), Expect = 8e-31
Identities = 54/74 (72%), Positives = 67/74 (89%)
Frame = -2
Query: 508 KDEDEDGLEEPDEDEHGETLCGACGDSYAADEFWICCDICEKWFPGKCVKITPAKAQHIS 329
++E+E+G+EE DEDE GET CGACG+SYAADEFWICCD+CE WF GKCVKITPA+A+HI
Sbjct: 182 EEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK 241
Query: 328 TYQCPSCSHQRART 287
Y+CPSCS++RAR+
Sbjct: 242 QYKCPSCSNKRARS 255
>pir||T01840 hypothetical protein F9D12.13 - Arabidopsis thaliana
gi|3319341|gb|AAC26230.1| similar to Medicago sativa
nucleic acid binding protein Alfin-1 (GB:L07291)
[Arabidopsis thaliana]
Length = 251
Score = 134 bits (336), Expect = 8e-31
Identities = 54/74 (72%), Positives = 67/74 (89%)
Frame = -2
Query: 508 KDEDEDGLEEPDEDEHGETLCGACGDSYAADEFWICCDICEKWFPGKCVKITPAKAQHIS 329
++E+E+G+EE DEDE GET CGACG+SYAADEFWICCD+CE WF GKCVKITPA+A+HI
Sbjct: 178 EEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK 237
Query: 328 TYQCPSCSHQRART 287
Y+CPSCS++RAR+
Sbjct: 238 QYKCPSCSNKRARS 251
>ref|NP_189865.1| nucleic acid binding protein-like; protein id: At3g42790.1,
supported by cDNA: gi_17065549 [Arabidopsis thaliana]
gi|11281497|pir||T47337 nucleic acid binding
protein-like - Arabidopsis thaliana
gi|7543887|emb|CAB87196.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|17065550|gb|AAL32929.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|21386979|gb|AAM47893.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 250
Score = 131 bits (330), Expect = 4e-30
Identities = 55/73 (75%), Positives = 66/73 (90%)
Frame = -2
Query: 508 KDEDEDGLEEPDEDEHGETLCGACGDSYAADEFWICCDICEKWFPGKCVKITPAKAQHIS 329
K+EDE+ ++E DED+HGETLCGACGDS ADEFWICCD+CEKWF GKCVKITPA+A+HI
Sbjct: 178 KEEDEE-IDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIK 236
Query: 328 TYQCPSCSHQRAR 290
Y+CPSCS++RAR
Sbjct: 237 QYKCPSCSNKRAR 249
>ref|NP_197551.1| zinc finger protein - like; protein id: At5g20510.1 [Arabidopsis
thaliana]
Length = 232
Score = 127 bits (319), Expect = 7e-29
Identities = 56/80 (70%), Positives = 68/80 (85%), Gaps = 7/80 (8%)
Frame = -2
Query: 508 KDEDE-----DGLEE--PDEDEHGETLCGACGDSYAADEFWICCDICEKWFPGKCVKITP 350
KDE+E +G EE DEDEHGETLCGACGD+YA+DEFWICCD+CEKWF G+CVKITP
Sbjct: 152 KDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECVKITP 211
Query: 349 AKAQHISTYQCPSCSHQRAR 290
A+A+HI Y+CP+CS++RAR
Sbjct: 212 ARAEHIKHYKCPTCSNKRAR 231
>gb|AAK55785.1|AC079038_19 Putative nucleic acid binding protein [Oryza sativa]
Length = 369
Score = 119 bits (297), Expect = 3e-26
Identities = 48/56 (85%), Positives = 52/56 (92%)
Frame = -2
Query: 472 EDEHGETLCGACGDSYAADEFWICCDICEKWFPGKCVKITPAKAQHISTYQCPSCS 305
E+EHGETLCGACG+SY ADEFWICCDICEKWF GKCVKITPAKA+HI Y+CPSCS
Sbjct: 204 EEEHGETLCGACGESYGADEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCS 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,268,640
Number of Sequences: 1393205
Number of extensions: 9220078
Number of successful extensions: 43324
Number of sequences better than 10.0: 215
Number of HSP's better than 10.0 without gapping: 30363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38765
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
